annotate tool-data/rsem_indices.loc.sample @ 3:59459de65740

mv RSEM datatypes to separate repository, remove samtools dependency
author Jim Johnson <jj@umn.edu>
date Mon, 10 Mar 2014 07:19:56 -0500
parents ca988deacfd1
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
ca988deacfd1 Uploaded
jjohnson
parents:
diff changeset
1 #This is a sample file distributed with Galaxy that enables tools
ca988deacfd1 Uploaded
jjohnson
parents:
diff changeset
2 #to use a directory of Bowtie indexed sequences data files. You will
ca988deacfd1 Uploaded
jjohnson
parents:
diff changeset
3 #need to create these data files and then create a bowtie_indices.loc
ca988deacfd1 Uploaded
jjohnson
parents:
diff changeset
4 #file similar to this one (store it in this directory) that points to
ca988deacfd1 Uploaded
jjohnson
parents:
diff changeset
5 #the directories in which those files are stored. The bowtie_indices.loc
ca988deacfd1 Uploaded
jjohnson
parents:
diff changeset
6 #file has this format (longer white space characters are TAB characters):
ca988deacfd1 Uploaded
jjohnson
parents:
diff changeset
7 #
ca988deacfd1 Uploaded
jjohnson
parents:
diff changeset
8 #<unique_build_id> <dbkey> <display_name> <file_base_path>
ca988deacfd1 Uploaded
jjohnson
parents:
diff changeset
9 #
ca988deacfd1 Uploaded
jjohnson
parents:
diff changeset
10 #So, for example, if you had hg18 indexed stored in
ca988deacfd1 Uploaded
jjohnson
parents:
diff changeset
11 #/depot/data2/galaxy/bowtie/hg18/,
ca988deacfd1 Uploaded
jjohnson
parents:
diff changeset
12 #then the bowtie_indices.loc entry would look like this:
ca988deacfd1 Uploaded
jjohnson
parents:
diff changeset
13 #
ca988deacfd1 Uploaded
jjohnson
parents:
diff changeset
14 #hg18 hg18 hg18 /depot/data2/galaxy/bowtie/hg18/hg18