annotate tool-data/rsem_indices.loc.sample @ 3:59459de65740
mv RSEM datatypes to separate repository, remove samtools dependency
| author |
Jim Johnson <jj@umn.edu> |
| date |
Mon, 10 Mar 2014 07:19:56 -0500 |
| parents |
ca988deacfd1 |
| children |
|
| rev |
line source |
|
0
|
1 #This is a sample file distributed with Galaxy that enables tools
|
|
|
2 #to use a directory of Bowtie indexed sequences data files. You will
|
|
|
3 #need to create these data files and then create a bowtie_indices.loc
|
|
|
4 #file similar to this one (store it in this directory) that points to
|
|
|
5 #the directories in which those files are stored. The bowtie_indices.loc
|
|
|
6 #file has this format (longer white space characters are TAB characters):
|
|
|
7 #
|
|
|
8 #<unique_build_id> <dbkey> <display_name> <file_base_path>
|
|
|
9 #
|
|
|
10 #So, for example, if you had hg18 indexed stored in
|
|
|
11 #/depot/data2/galaxy/bowtie/hg18/,
|
|
|
12 #then the bowtie_indices.loc entry would look like this:
|
|
|
13 #
|
|
|
14 #hg18 hg18 hg18 /depot/data2/galaxy/bowtie/hg18/hg18
|
