comparison tool-data/rsem_indices.loc.sample @ 0:ca988deacfd1

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author jjohnson
date Fri, 07 Feb 2014 08:07:29 -0500
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1 #This is a sample file distributed with Galaxy that enables tools
2 #to use a directory of Bowtie indexed sequences data files. You will
3 #need to create these data files and then create a bowtie_indices.loc
4 #file similar to this one (store it in this directory) that points to
5 #the directories in which those files are stored. The bowtie_indices.loc
6 #file has this format (longer white space characters are TAB characters):
7 #
8 #<unique_build_id> <dbkey> <display_name> <file_base_path>
9 #
10 #So, for example, if you had hg18 indexed stored in
11 #/depot/data2/galaxy/bowtie/hg18/,
12 #then the bowtie_indices.loc entry would look like this:
13 #
14 #hg18 hg18 hg18 /depot/data2/galaxy/bowtie/hg18/hg18