Mercurial > repos > jjohnson > rsem
comparison tool-data/rsem_indices.loc.sample @ 0:ca988deacfd1
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| author | jjohnson |
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| date | Fri, 07 Feb 2014 08:07:29 -0500 |
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| -1:000000000000 | 0:ca988deacfd1 |
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| 1 #This is a sample file distributed with Galaxy that enables tools | |
| 2 #to use a directory of Bowtie indexed sequences data files. You will | |
| 3 #need to create these data files and then create a bowtie_indices.loc | |
| 4 #file similar to this one (store it in this directory) that points to | |
| 5 #the directories in which those files are stored. The bowtie_indices.loc | |
| 6 #file has this format (longer white space characters are TAB characters): | |
| 7 # | |
| 8 #<unique_build_id> <dbkey> <display_name> <file_base_path> | |
| 9 # | |
| 10 #So, for example, if you had hg18 indexed stored in | |
| 11 #/depot/data2/galaxy/bowtie/hg18/, | |
| 12 #then the bowtie_indices.loc entry would look like this: | |
| 13 # | |
| 14 #hg18 hg18 hg18 /depot/data2/galaxy/bowtie/hg18/hg18 |