Mercurial > repos > jjohnson > rsem
comparison rsem_calculate_expression.xml @ 5:14267d364365 default tip
Update for dataset files_path - use model from BB pull request 532
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Thu, 04 Feb 2016 06:50:26 -0600 |
| parents | 30a8343fb0e7 |
| children |
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| 4:30a8343fb0e7 | 5:14267d364365 |
|---|---|
| 92 #end if | 92 #end if |
| 93 $input.rsem_sam | 93 $input.rsem_sam |
| 94 #end if | 94 #end if |
| 95 ## RSEM reference | 95 ## RSEM reference |
| 96 #if $reference.refSrc == 'history': | 96 #if $reference.refSrc == 'history': |
| 97 ${reference.rsem_ref.dataset.extra_files_path}/${reference.rsem_ref.metadata.reference_name} | 97 ${reference.rsem_ref.extra_files_path}/${reference.rsem_ref.metadata.reference_name} |
| 98 #elif $reference.refSrc == 'cached': | 98 #elif $reference.refSrc == 'cached': |
| 99 ${reference.index.fields.path} | 99 ${reference.index.fields.path} |
| 100 #end if | 100 #end if |
| 101 ## sample_name: use a hard coded name so we can pull out galaxy outputs | 101 ## sample_name: use a hard coded name so we can pull out galaxy outputs |
| 102 rsem_output | 102 rsem_output |