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diff rsem_prepare_reference.xml @ 5:14267d364365 default tip

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Update for dataset files_path - use model from BB pull request 532
author Jim Johnson <jj@umn.edu>
date Thu, 04 Feb 2016 06:50:26 -0600
parents 30a8343fb0e7
children
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--- a/rsem_prepare_reference.xml	Mon Oct 13 15:32:39 2014 -0500
+++ b/rsem_prepare_reference.xml	Thu Feb 04 06:50:26 2016 -0600
@@ -6,8 +6,8 @@
   </requirements>
   <command>
     echo $reference_name " " | tee $reference_file &amp;&amp;
-    mkdir $reference_file.dataset.extra_files_path &amp;&amp; 
-    cd $reference_file.dataset.extra_files_path &amp;&amp; 
+    mkdir $reference_file.files_path &amp;&amp; 
+    cd $reference_file.files_path &amp;&amp; 
     rsem-prepare-reference 
     #if $polya.polya_use == 'add':
       #if $polya.polya_length: