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comparison samtools_filter.xml @ 1:f2e4e81f3639

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Add tool_dependencies.xml and test-data
author Jim Johnson <jj@umn.edu>
date Mon, 01 Apr 2013 10:57:16 -0500
parents 5dcbce4f5971
children
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0:5dcbce4f5971 1:f2e4e81f3639
1 <tool id="samtools_filter" name="Filter SAM or BAM" version="1.1.0"> 1 <tool id="samtools_filter" name="Filter SAM or BAM" version="1.1.1">
2 <description>files on FLAG MAPQ RG LN or by region</description> 2 <description>files on FLAG MAPQ RG LN or by region</description>
3 <requirements> 3 <requirements>
4 <requirement type="package">samtools</requirement> 4 <requirement type="package" version="0.1.18">samtools</requirement>
5 </requirements> 5 </requirements>
6 <!-- 6 <!--
7 samtools view [-bchuHS] [-t in.refList] [-o output] [-f reqFlag] [-F skipFlag] [-q minMapQ] [-l library] [-r readGroup] [-R rgFile] <in.bam>|<in.sam> [region1 [...]] 7 samtools view [-bchuHS] [-t in.refList] [-o output] [-f reqFlag] [-F skipFlag] [-q minMapQ] [-l library] [-r readGroup] [-R rgFile] <in.bam>|<in.sam> [region1 [...]]
8 Usage: samtools view [options] <in.bam>|<in.sam> [region1 [...]] 8 Usage: samtools view [options] <in.bam>|<in.sam> [region1 [...]]
9 9