--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Nov 08 16:23:10 2013 -0500
@@ -0,0 +1,26 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="samtools" version="0.1.18">
+        <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="bwa" version="0.6.2">
+        <repository changeset_revision="0778635a84ba" name="package_bwa_0_6_2" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="blat_server" version="latest">
+        <repository changeset_revision="5920144e9e9b" name="package_blat_server" owner="jjohnson" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="cap3" version="3">
+        <repository changeset_revision="8b91ecadabb5" name="package_cap3_3" owner="jjohnson" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="crest" version="1.0.1">
+        <repository changeset_revision="963cf85f6c8f" name="package_crest_1_0_1" owner="jjohnson" toolshed="http://toolshed.g2.bx.psu.edu" />
+          <readme>
+CREST requires: 
+  Bioperl package Bio::DB:Sam  
+          </readme>
+    </package>
+    <package name="shear" version="0.2.5">
+        <repository changeset_revision="485c82978457" name="package_shear_0_2_5" owner="jjohnson" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+
+</tool_dependency>