# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1391118835 21600
# Node ID 3cbbffb3ae4717613d74ae4f19d3f1cbece3fd9d
# Parent  65255beda9725e25ba088f2353249e4d94c07aa4
Update to shear version 0.2.7

diff -r 65255beda972 -r 3cbbffb3ae47 shear_assemble.xml
--- a/shear_assemble.xml	Fri Nov 08 16:23:10 2013 -0500
+++ b/shear_assemble.xml	Thu Jan 30 15:53:55 2014 -0600
@@ -1,7 +1,7 @@
-<tool id="shear_assemble" name="SHEAR-Assemble" version="0.0.5">
+<tool id="shear_assemble" name="SHEAR-Assemble" version="0.0.7">
   <description>create a personal genome from sdi</description>
   <requirements>
-    <requirement type="package" version="0.2.5">shear</requirement>
+    <requirement type="package" version="0.2.7">shear</requirement>
   </requirements>
   <!--
   <version_command></version_command>
diff -r 65255beda972 -r 3cbbffb3ae47 shear_sv.xml
--- a/shear_sv.xml	Fri Nov 08 16:23:10 2013 -0500
+++ b/shear_sv.xml	Thu Jan 30 15:53:55 2014 -0600
@@ -1,9 +1,9 @@
 <?xml version="1.0"?>
-<tool id="shear_sv" name="SHEAR-SV" version="0.0.5">
+<tool id="shear_sv" name="SHEAR-SV" version="0.0.7">
   <description>find SVs and estimate the heterogeneity levels from a BAM</description>
   <requirements>
-    <requirement type="package" version="0.2.5">shear</requirement>
-    <requirement type="package" version="0.1.18">samtools</requirement>
+    <requirement type="package" version="0.2.7">shear</requirement>
+    <requirement type="package" version="0.1.19">samtools</requirement>
     <requirement type="package" version="0.6.2">bwa</requirement>
     <requirement type="package" version="1.0.1">crest</requirement>
     <requirement type="package" version="latest">blat_server</requirement>
diff -r 65255beda972 -r 3cbbffb3ae47 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Nov 08 16:23:10 2013 -0500
+++ b/tool_dependencies.xml	Thu Jan 30 15:53:55 2014 -0600
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="samtools" version="0.1.18">
-        <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+    <package name="samtools" version="0.1.19">
+        <repository changeset_revision="00e17a794a2e" name="package_samtools_0_1_19" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="bwa" version="0.6.2">
         <repository changeset_revision="0778635a84ba" name="package_bwa_0_6_2" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
@@ -19,8 +19,8 @@
   Bioperl package Bio::DB:Sam  
           </readme>
     </package>
-    <package name="shear" version="0.2.5">
-        <repository changeset_revision="485c82978457" name="package_shear_0_2_5" owner="jjohnson" toolshed="http://toolshed.g2.bx.psu.edu" />
+    <package name="shear" version="0.2.7">
+        <repository changeset_revision="f64a3597da37" name="package_shear_0_2_7" owner="jjohnson" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>
 
 </tool_dependency>