# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1405351340 18000
# Node ID 7506693aff3bd91f3bee414c2633b84e56659421
# Parent  b84716da559502b72999a5f4ed5ea6683116bfb2
Update to SHEAR version 0.2.11

diff -r b84716da5595 -r 7506693aff3b shear_assemble.xml
--- a/shear_assemble.xml	Sun Apr 27 19:57:03 2014 -0500
+++ b/shear_assemble.xml	Mon Jul 14 10:22:20 2014 -0500
@@ -1,7 +1,7 @@
-<tool id="shear_assemble" name="SHEAR-Assemble" version="0.0.9">
+<tool id="shear_assemble" name="SHEAR-Assemble" version="0.0.11">
   <description>create a personal genome from sdi</description>
   <requirements>
-    <requirement type="package" version="0.2.9">shear</requirement>
+    <requirement type="package" version="0.2.11">shear</requirement>
   </requirements>
   <!--
   <version_command></version_command>
diff -r b84716da5595 -r 7506693aff3b shear_sv.xml
--- a/shear_sv.xml	Sun Apr 27 19:57:03 2014 -0500
+++ b/shear_sv.xml	Mon Jul 14 10:22:20 2014 -0500
@@ -1,8 +1,8 @@
 <?xml version="1.0"?>
-<tool id="shear_sv" name="SHEAR-SV" version="0.0.9">
+<tool id="shear_sv" name="SHEAR-SV" version="0.0.11">
   <description>find SVs and estimate the heterogeneity levels from a BAM</description>
   <requirements>
-    <requirement type="package" version="0.2.9">shear</requirement>
+    <requirement type="package" version="0.2.11">shear</requirement>
     <requirement type="package" version="0.1.19">samtools</requirement>
     <requirement type="package" version="0.6.2">bwa</requirement>
     <requirement type="package" version="1.0.1">crest</requirement>
diff -r b84716da5595 -r 7506693aff3b tool_dependencies.xml
--- a/tool_dependencies.xml	Sun Apr 27 19:57:03 2014 -0500
+++ b/tool_dependencies.xml	Mon Jul 14 10:22:20 2014 -0500
@@ -19,8 +19,8 @@
   Bioperl package Bio::DB:Sam  
           </readme>
     </package>
-    <package name="shear" version="0.2.9">
-        <repository changeset_revision="516ed9ae8174" name="package_shear_0_2_9" owner="jjohnson" toolshed="http://toolshed.g2.bx.psu.edu" />
+    <package name="shear" version="0.2.11">
+        <repository changeset_revision="a7d6848d1e58" name="package_shear_0_2_11" owner="jjohnson" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>
 
 </tool_dependency>