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comparison snpSift_caseControl.xml @ 5:192a236898f5

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Add test cases for SnpSift
author Jim Johnson <jj@umn.edu>
date Mon, 25 Mar 2013 08:51:33 -0500
parents a9bae7957c36
children ec16dae84230
comparison
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4:fe23d90249ee 5:192a236898f5
34 </outputs> 34 </outputs>
35 <stdio> 35 <stdio>
36 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> 36 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
37 <exit_code range="1:" level="fatal" description="Error" /> 37 <exit_code range="1:" level="fatal" description="Error" />
38 </stdio> 38 </stdio>
39 <tests>
40
41 <test>
42 <param name="input" ftype="vcf" value="test.private.01.vcf"/>
43 <param name="hhCase" value="any"/>
44 <param name="hhControl" value="any"/>
45 <param name="caseControStr" value="--"/>
46 <output name="output">
47 <assert_contents>
48 <has_text text="Cases=0,0,0;" />
49 <has_text text="Controls=0,0,0;" />
50 </assert_contents>
51 </output>
52 </test>
53
54 <test>
55 <param name="input" ftype="vcf" value="test.private.02.vcf"/>
56 <param name="hhCase" value="any"/>
57 <param name="hhControl" value="any"/>
58 <param name="caseControStr" value="--"/>
59 <output name="output">
60 <assert_contents>
61 <has_text text="Cases=0,0,0;" />
62 <has_text text="Controls=2,0,4;" />
63 </assert_contents>
64 </output>
65 </test>
66
67 <test>
68 <param name="input" ftype="vcf" value="test.private.02.vcf"/>
69 <param name="hhCase" value="any"/>
70 <param name="hhControl" value="any"/>
71 <param name="caseControStr" value="-+"/>
72 <output name="output">
73 <assert_contents>
74 <has_text text="Cases=1,0,2;" />
75 <has_text text="Controls=1,0,2;" />
76 </assert_contents>
77 </output>
78 </test>
79
80 </tests>
39 81
40 <help> 82 <help>
41 83
42 **SnpSift CaseControl** 84 **SnpSift CaseControl**
43 85