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comparison snpSift_caseControl.xml @ 6:ec16dae84230

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Fix tests for SnpSift caseControl and intervals
author Jim Johnson <jj@umn.edu>
date Tue, 26 Mar 2013 15:24:30 -0500
parents 192a236898f5
children 13b6ad2ddace
comparison
equal deleted inserted replaced
5:192a236898f5 6:ec16dae84230
43 <param name="hhCase" value="any"/> 43 <param name="hhCase" value="any"/>
44 <param name="hhControl" value="any"/> 44 <param name="hhControl" value="any"/>
45 <param name="caseControStr" value="--"/> 45 <param name="caseControStr" value="--"/>
46 <output name="output"> 46 <output name="output">
47 <assert_contents> 47 <assert_contents>
48 <has_text text="Cases=0,0,0;" /> 48 <has_text text="CaseControl=0/0,0/2;" />
49 <has_text text="Controls=0,0,0;" />
50 </assert_contents> 49 </assert_contents>
51 </output> 50 </output>
52 </test> 51 </test>
53 52
54 <test> 53 <test>
56 <param name="hhCase" value="any"/> 55 <param name="hhCase" value="any"/>
57 <param name="hhControl" value="any"/> 56 <param name="hhControl" value="any"/>
58 <param name="caseControStr" value="--"/> 57 <param name="caseControStr" value="--"/>
59 <output name="output"> 58 <output name="output">
60 <assert_contents> 59 <assert_contents>
61 <has_text text="Cases=0,0,0;" /> 60 <has_text text="CaseControl=0/0,2/0;" />
62 <has_text text="Controls=2,0,4;" />
63 </assert_contents> 61 </assert_contents>
64 </output> 62 </output>
65 </test> 63 </test>
66 64
67 <test> 65 <test>
69 <param name="hhCase" value="any"/> 67 <param name="hhCase" value="any"/>
70 <param name="hhControl" value="any"/> 68 <param name="hhControl" value="any"/>
71 <param name="caseControStr" value="-+"/> 69 <param name="caseControStr" value="-+"/>
72 <output name="output"> 70 <output name="output">
73 <assert_contents> 71 <assert_contents>
74 <has_text text="Cases=1,0,2;" /> 72 <has_text text="CaseControl=1/0,1/0;" />
75 <has_text text="Controls=1,0,2;" />
76 </assert_contents> 73 </assert_contents>
77 </output> 74 </output>
78 </test> 75 </test>
79 76
80 </tests> 77 </tests>