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comparison snpSift_int.xml @ 6:ec16dae84230

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Fix tests for SnpSift caseControl and intervals
author Jim Johnson <jj@umn.edu>
date Tue, 26 Mar 2013 15:24:30 -0500
parents 192a236898f5
children 13b6ad2ddace
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5:192a236898f5 6:ec16dae84230
22 <exit_code range="1:" level="fatal" description="Error" /> 22 <exit_code range="1:" level="fatal" description="Error" />
23 </stdio> 23 </stdio>
24 <tests> 24 <tests>
25 <test> 25 <test>
26 <param name="input" ftype="vcf" value="annotate_5.vcf"/> 26 <param name="input" ftype="vcf" value="annotate_5.vcf"/>
27 <param name="bed" ftype="bed" value="interval.bed"/> 27 <param name="bedFile" ftype="bed" value="interval.bed"/>
28 <output name="output"> 28 <output name="output">
29 <assert_contents> 29 <assert_contents>
30 <has_text text="872687" /> 30 <has_text text="872687" />
31 <not_has_text text="1195966" /> 31 <not_has_text text="1195966" />
32 </assert_contents> 32 </assert_contents>