view test-data/test01.vcf @ 7:b26a1aff7f81

Fix issues with snpEff commandline template and add test cases
author Jim Johnson <jj@umn.edu>
date Thu, 28 Mar 2013 12:29:45 -0500
parents 192a236898f5
children
line wrap: on
line source

##fileformat=VCFv4.1
##samtoolsVersion=0.1.16 (r963:234)
##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
##INFO=<ID=MQ,Number=1,Type=Integer,Description="Root-mean-square mapping quality of covering reads">
##INFO=<ID=FQ,Number=1,Type=Float,Description="Phred probability of all samples being the same">
##INFO=<ID=AF1,Number=1,Type=Float,Description="Max-likelihood estimate of the site allele frequency of the first ALT allele">
##INFO=<ID=G3,Number=3,Type=Float,Description="ML estimate of genotype frequencies">
##INFO=<ID=HWE,Number=1,Type=Float,Description="Chi^2 based HWE test P-value based on G3">
##INFO=<ID=CI95,Number=2,Type=Float,Description="Equal-tail Bayesian credible interval of the site allele frequency at the 95% level">
##INFO=<ID=PV4,Number=4,Type=Float,Description="P-values for strand bias, baseQ bias, mapQ bias and tail distance bias">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##INFO=<ID=PC2,Number=2,Type=Integer,Description="Phred probability of the nonRef allele frequency in group1 samples being larger (,smaller) than in group2.">
##INFO=<ID=PCHI2,Number=1,Type=Float,Description="Posterior weighted chi^2 P-value for testing the association between group1 and group2 samples.">
##INFO=<ID=QCHI2,Number=1,Type=Integer,Description="Phred scaled PCHI2.">
##INFO=<ID=PR,Number=1,Type=Integer,Description="# permutations yielding a smaller PCHI2.">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GL,Number=3,Type=Float,Description="Likelihoods for RR,RA,AA genotypes (R=ref,A=alt)">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="# high-quality bases">
##FORMAT=<ID=SP,Number=1,Type=Integer,Description="Phred-scaled strand bias P-value">
##FORMAT=<ID=PL,Number=-1,Type=Integer,Description="List of Phred-scaled genotype likelihoods, number of values is (#ALT+1)*(#ALT+2)/2">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	s_1_BcA2.sort.rmdup.Q20.noMh.bam
NT_166464	696	.	G	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166464	745	.	G	C	6.98	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:36,3,0:4
NT_166464	7258	.	A	C	40	.	DP=4;AF1=0.5008;CI95=0.5,0.5;DP4=1,0,2,1;MQ=32;FQ=-4.12;PV4=1,0.28,0.21,0.17	GT:PL:GQ	0/1:70,0,25:28
NT_166464	7268	.	A	G	8.65	.	DP=4;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,1,1;MQ=30;FQ=3.32;PV4=1,0.017,0,1	GT:PL:GQ	0/1:38,0,28:32
NT_166464	7283	.	T	C	11.3	.	DP=3;AF1=0.501;CI95=0.5,0.5;DP4=1,0,1,1;MQ=30;FQ=-4.81;PV4=1,1,0,1	GT:PL:GQ	0/1:41,0,24:28
NT_166464	7335	.	G	A	18.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=25;FQ=-33	GT:PL:GQ	1/1:50,6,0:10
NT_166464	8030	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166452	8268	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166452	16693	.	T	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166480	12474	.	G	A	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
NT_166480	12483	.	A	G	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
NT_166476	578	.	C	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166476	22223	.	A	C	3.01	.	DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,2,0;MQ=32;FQ=4.63;PV4=0.33,0.26,0,0.42	GT:PL:GQ	0/1:30,0,43:28
NT_166476	22256	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166476	23076	.	A	T	8.44	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=25;FQ=-33	GT:PL:GQ	1/1:39,6,0:8
NT_166476	23487	.	C	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166454	64	.	T	A	8.64	.	DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,4,2,0;MQ=29;FQ=11.3;PV4=0.14,1,1,1	GT:PL:GQ	0/1:38,0,91:40
NT_166454	95	.	T	A	9.52	.	DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,3,1,1;MQ=29;FQ=12.3;PV4=1,0.19,1,1	GT:PL:GQ	0/1:39,0,101:41
NT_166454	1580	.	T	C	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
NT_166454	7132	.	A	G	42.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:74,6,0:10
NT_166454	7142	.	T	C	42.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:74,6,0:10
NT_166454	7181	.	C	A	11.1	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:42,6,0:9
NT_166454	11670	.	C	T	4.61	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33	GT:PL:GQ	1/1:34,6,0:5
NT_166454	15049	.	A	T	13.9	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:45,6,0:10
NT_166454	15052	.	TA	T	35.2	.	INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:74,6,0:10
NT_166454	15373	.	C	G	30.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33	GT:PL:GQ	1/1:62,6,0:10
NT_166454	15388	.	C	G	22.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33	GT:PL:GQ	1/1:54,6,0:10
NT_166454	15440	.	TA	T	28.2	.	INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:67,6,0:10
NT_166454	18840	.	C	T	6.79	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-33	GT:PL:GQ	1/1:37,6,0:7
NT_166454	18863	.	T	C	13.9	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-33	GT:PL:GQ	1/1:45,6,0:10
NT_166454	18933	.	C	T	4.77	.	DP=3;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,2,0;MQ=30;FQ=-3.1;PV4=1,0.032,0,0.31	GT:PL:GQ	0/1:33,0,28:30
NT_166454	21433	.	G	T	6.02	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:36,6,0:6
NT_166454	21485	.	TAAAAA	TAAAA	17.5	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=37;FQ=-43.5	GT:PL:GQ	1/1:57,9,0:15
NT_166481	473	.	A	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166481	476	.	A	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166481	558	.	G	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166481	9526	.	T	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166481	10879	.	T	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166481	17878	.	T	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166481	20402	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166481	20413	.	G	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166459	13329	.	T	G	20.1	.	DP=3;AF1=0.5013;CI95=0.5,0.5;DP4=1,0,1,1;MQ=37;FQ=-5.45;PV4=1,0.48,1,0.33	GT:PL:GQ	0/1:50,0,23:26
NT_166459	21532	.	T	C	6.98	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:36,3,0:4
NT_166473	10619	.	T	A	4.13	.	DP=4;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,0,3;MQ=28;FQ=-3.64;PV4=0.25,0.036,0,1	GT:PL:GQ	0/1:32,0,27:29
NT_166473	10641	.	A	T	47.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=28;FQ=-39	GT:PL:GQ	1/1:80,12,0:21
NT_166461	20175	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166462	4505	.	A	G	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
NT_166462	4585	.	C	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166462	25794	.	A	C	7.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166462	25801	.	T	G	22.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33	GT:PL:GQ	1/1:54,6,0:10
NT_166462	25952	.	T	C	32.1	.	DP=9;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=37;FQ=-45	GT:PL:GQ	1/1:65,18,0:33
NT_166462	25967	.	T	C	135	.	DP=9;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=37;FQ=-54	GT:PL:GQ	1/1:168,27,0:51
NT_166462	26035	.	T	C	82	.	DP=9;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=37;FQ=-54	GT:PL:GQ	1/1:115,27,0:51
NT_166462	26537	.	C	G	83.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=37;FQ=-39	GT:PL:GQ	1/1:116,12,0:21
NT_166462	26577	.	A	C	29.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=37;FQ=-39	GT:PL:GQ	1/1:62,12,0:21
NT_166462	26682	.	A	G	222	.	DP=19;AF1=1;CI95=1,1;DP4=0,0,9,9;MQ=30;FQ=-81	GT:PL:GQ	1/1:255,54,0:99
NT_166462	26690	.	A	G	184	.	DP=20;AF1=1;CI95=1,1;DP4=0,0,10,10;MQ=31;FQ=-87	GT:PL:GQ	1/1:217,60,0:99
NT_166462	26717	.	A	G	207	.	DP=10;AF1=1;CI95=1,1;DP4=0,0,6,4;MQ=36;FQ=-57	GT:PL:GQ	1/1:240,30,0:57
NT_166462	26722	.	T	C	98	.	DP=10;AF1=1;CI95=1,1;DP4=0,0,6,4;MQ=36;FQ=-57	GT:PL:GQ	1/1:131,30,0:57
NT_166462	26762	.	CAA	CAAA	207	.	INDEL;DP=10;AF1=1;CI95=1,1;DP4=0,0,6,4;MQ=36;FQ=-64.5	GT:PL:GQ	1/1:248,30,0:57
NT_166453	185	.	A	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166453	198	.	T	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166453	264	.	T	C	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
NT_166453	312	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166453	321	.	C	T	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
NT_166453	20370	.	G	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166467	12821	.	C	T	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
NT_166338	16706	.	C	A	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
NT_166338	16707	.	T	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166338	16708	.	C	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166338	16774	.	G	C	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
NT_166442	37512	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166442	37558	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166442	37567	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166451	487	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166450	27330	.	T	A	28	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=33;FQ=-36	GT:PL:GQ	1/1:60,9,0:16
NT_166450	27339	.	T	C	51	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=33;FQ=-36	GT:PL:GQ	1/1:83,9,0:16
NT_166450	27452	.	G	A	101	.	DP=11;AF1=1;CI95=1,1;DP4=0,0,6,4;MQ=37;FQ=-57	GT:PL:GQ	1/1:134,30,0:57
NT_166450	27483	.	T	C	67.3	.	DP=7;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=37;FQ=-42	GT:PL:GQ	1/1:100,15,0:27
NT_166450	27488	.	T	G	7.59	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33	GT:PL:GQ	1/1:38,6,0:7
NT_166450	27538	.	A	G	12	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=25;FQ=-33	GT:PL:GQ	1/1:43,6,0:9
NT_166450	27561	.	T	C	48.1	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,4;MQ=27;FQ=-45	GT:PL:GQ	1/1:81,18,0:33
NT_166450	27591	.	T	C	54.1	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,4;MQ=27;FQ=-45	GT:PL:GQ	1/1:87,18,0:33
NT_166450	27618	.	T	C	77.1	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,4;MQ=27;FQ=-45	GT:PL:GQ	1/1:110,18,0:33
NT_166450	27627	.	A	G	102	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,4;MQ=27;FQ=-45	GT:PL:GQ	1/1:135,18,0:33
NT_166450	27651	.	G	A	10.2	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:41,6,0:8
NT_166450	27659	.	C	A	65	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=37;FQ=-36	GT:PL:GQ	1/1:97,9,0:16
NT_166450	27664	.	T	C	31.5	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=37;FQ=-39	GT:PL:GQ	1/1:64,12,0:21
NT_166450	27700	.	T	C	106	.	DP=8;AF1=1;CI95=1,1;DP4=0,0,5,3;MQ=37;FQ=-51	GT:PL:GQ	1/1:139,24,0:45
NT_166450	27798	.	C	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166450	27807	.	T	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166450	27813	.	A	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166447	29896	.	A	G	4.77	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
NT_166468	8984	.	G	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166468	8986	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166468	8989	.	G	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166477	2080	.	T	A	3.02	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:30,3,0:4
NT_166455	23979	.	C	A	6.98	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:36,3,0:4
NT_166291	4663	.	G	A	11.1	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:42,6,0:9
NT_166291	4684	.	C	G	32.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:64,6,0:10
NT_166291	27578	.	G	A	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
NT_166291	35549	.	C	G	117	.	DP=10;AF1=1;CI95=1,1;DP4=0,0,6,4;MQ=36;FQ=-57	GT:PL:GQ	1/1:150,30,0:57
NT_166291	35756	.	A	G	198	.	DP=20;AF1=1;CI95=1,1;DP4=0,0,9,10;MQ=37;FQ=-84	GT:PL:GQ	1/1:231,57,0:99
NT_166463	6735	.	C	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166463	6736	.	T	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166309	64876	.	A	G	25	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=33;FQ=-36	GT:PL:GQ	1/1:57,9,0:15
NT_166309	64910	.	A	C	30.3	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=30;FQ=-42	GT:PL:GQ	1/1:63,15,0:27
NT_166309	64925	.	A	G	29.3	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=30;FQ=-42	GT:PL:GQ	1/1:62,15,0:27
NT_166309	64960	.	T	G	45.5	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=28;FQ=-39	GT:PL:GQ	1/1:78,12,0:21
NT_166309	64971	.	T	G	30	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=25;FQ=-36	GT:PL:GQ	1/1:62,9,0:16
NT_166309	64979	.	A	C	13.9	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-33	GT:PL:GQ	1/1:45,6,0:10
NT_166309	69760	.	A	G	52	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=33;FQ=-36	GT:PL:GQ	1/1:84,9,0:16
NT_166309	69765	.	T	C	42	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=33;FQ=-36	GT:PL:GQ	1/1:74,9,0:16
NT_166309	69773	.	T	C	35	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=33;FQ=-36	GT:PL:GQ	1/1:67,9,0:16
NT_166309	69799	.	G	C	25	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=33;FQ=-36	GT:PL:GQ	1/1:57,9,0:15
NT_166309	69869	.	T	C	35.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-33	GT:PL:GQ	1/1:67,6,0:10
NT_166309	103113	.	T	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166309	139729	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166282	41545	.	C	T	3.02	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:30,3,0:4
NT_166282	94999	.	C	T	31.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=37;FQ=-39	GT:PL:GQ	1/1:64,12,0:21
NT_166282	95050	.	T	G	33	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=37;FQ=-36	GT:PL:GQ	1/1:65,9,0:16
NT_166314	112573	.	C	A	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
NT_166314	118593	.	C	T	35.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=34;FQ=-39	GT:PL:GQ	1/1:68,12,0:21
NT_166314	118608	.	C	T	73.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=34;FQ=-39	GT:PL:GQ	1/1:106,12,0:21
NT_166314	118836	.	A	C	84.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=37;FQ=-39	GT:PL:GQ	1/1:117,12,0:21
NT_166314	118924	.	G	C	212	.	DP=10;AF1=1;CI95=1,1;DP4=0,0,3,7;MQ=37;FQ=-57	GT:PL:GQ	1/1:245,30,0:57
NT_166314	144387	.	A	T	3.54	.	DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,1;MQ=37;FQ=-3.07;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,29:29
NT_166314	155508	.	A	T	65.1	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,3;MQ=37;FQ=-45	GT:PL:GQ	1/1:98,18,0:33
NT_112000	52371	.	G	T	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
NT_112000	52375	.	A	C	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
NT_110857	19739	.	A	G	6.98	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:36,3,0:4
NT_166280	4649	.	C	A	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
NT_166280	137528	.	T	C	32.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-33	GT:PL:GQ	1/1:64,6,0:10
NT_166280	137545	.	C	T	13.9	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-33	GT:PL:GQ	1/1:45,6,0:10
NT_166311	1782	.	C	T	3.02	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:30,3,0:4
NT_166311	69821	.	G	A	65.3	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,1;MQ=33;FQ=-42	GT:PL:GQ	1/1:98,15,0:27
NT_166311	69841	.	C	A	42.3	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,1;MQ=33;FQ=-42	GT:PL:GQ	1/1:75,15,0:27
NT_166311	69894	.	T	G	26	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=37;FQ=-36	GT:PL:GQ	1/1:58,9,0:16
NT_166311	69917	.	G	A	20	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=37;FQ=-36	GT:PL:GQ	1/1:52,9,0:15
NT_166310	83175	.	C	G	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
NT_166438	13070	.	C	A	6.98	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:36,3,0:4
NT_162750	40051	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_162750	40058	.	A	G	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
NT_162750	71153	.	C	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_162750	71157	.	T	G	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
NT_166387	1835	.	C	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166281	28467	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166281	28468	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166313	178838	.	G	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166313	179067	.	C	T	3.01	.	DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=3.25;PV4=1,1,1,1	GT:PL:GQ	0/1:30,0,31:28
NT_166313	179084	.	T	C	3.54	.	DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=-3.07;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,29:29
NT_166313	179560	.	A	G	97	.	DP=6;AF1=0.5032;CI95=0.5,0.5;DP4=1,0,1,4;MQ=35;FQ=-8.63;PV4=0.33,0.019,0.35,1	GT:PL:GQ	0/1:127,0,19:22
NT_166313	179573	.	A	T	76.1	.	DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,4;MQ=35;FQ=-45	GT:PL:GQ	1/1:109,18,0:33
NT_166313	179575	.	C	T	68	.	DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,4;MQ=36;FQ=26;PV4=1,0.0056,0.29,1	GT:PL:GQ	0/1:98,0,53:56
NT_166313	179587	.	A	G	42	.	DP=8;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,4;MQ=36;FQ=42.9;PV4=1,0.0032,0.24,1	GT:PL:GQ	0/1:72,0,74:73
NT_166313	180199	.	A	G	64	.	DP=13;AF1=0.5;CI95=0.5,0.5;DP4=9,0,3,1;MQ=37;FQ=67;PV4=0.31,1,1,1	GT:PL:GQ	0/1:94,0,143:97
NT_166313	180204	.	C	T	17.1	.	DP=14;AF1=0.5;CI95=0.5,0.5;DP4=9,0,3,1;MQ=37;FQ=20.1;PV4=0.31,5.5e-06,1,1	GT:PL:GQ	0/1:47,0,143:50
NT_166313	180258	.	C	G	38	.	DP=19;AF1=0.5;CI95=0.5,0.5;DP4=12,2,2,2;MQ=36;FQ=41;PV4=0.2,0.37,0.029,1	GT:PL:GQ	0/1:68,0,212:71
NT_166313	180274	.	A	G	45	.	DP=14;AF1=0.5;CI95=0.5,0.5;DP4=5,0,3,6;MQ=36;FQ=47.6;PV4=0.031,2.3e-05,0.15,1	GT:PL:GQ	0/1:75,0,85:78
NT_166313	180300	.	A	T	11.3	.	DP=15;AF1=0.5;CI95=0.5,0.5;DP4=4,6,1,4;MQ=36;FQ=14.2;PV4=0.6,1.7e-08,1,1	GT:PL:GQ	0/1:41,0,208:43
NT_166313	180331	.	C	T	189	.	DP=17;AF1=0.5;CI95=0.5,0.5;DP4=1,3,6,6;MQ=34;FQ=59;PV4=0.58,0.16,0.068,1	GT:PL:GQ	0/1:219,0,86:89
NT_166313	180352	.	C	T	126	.	DP=17;AF1=0.5;CI95=0.5,0.5;DP4=5,5,3,4;MQ=34;FQ=129;PV4=1,1,1,1	GT:PL:GQ	0/1:156,0,196:99
NT_166313	180384	.	G	A	93	.	DP=16;AF1=0.5;CI95=0.5,0.5;DP4=2,4,6,4;MQ=34;FQ=95.9;PV4=0.61,3.3e-10,0.041,1	GT:PL:GQ	0/1:123,0,141:99
NT_166313	180748	.	A	C	18.1	.	DP=7;AF1=0.5;CI95=0.5,0.5;DP4=4,1,2,0;MQ=37;FQ=21;PV4=1,1,1,0.13	GT:PL:GQ	0/1:48,0,123:51
NT_166313	180901	.	A	G	86.5	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=37;FQ=-39	GT:PL:GQ	1/1:119,12,0:21
NT_166313	182411	.	T	G	5.46	.	DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=3,0,0,3;MQ=35;FQ=7.8;PV4=0.1,0.0036,0.19,1	GT:PL:GQ	0/1:34,0,72:34
NT_166313	182447	.	A	G	10.4	.	DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,3;MQ=35;FQ=13;PV4=0.1,0.014,0.25,0.14	GT:PL:GQ	0/1:40,0,53:42
NT_166313	183242	.	C	A	3.02	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:30,3,0:4
NT_166313	184154	.	C	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166313	184175	.	G	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166313	184807	.	T	C	15.9	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:47,6,0:10
NT_166313	184892	.	T	G	38.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:70,6,0:10
NT_166313	184925	.	T	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166313	184960	.	T	C	11.1	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33	GT:PL:GQ	1/1:42,6,0:9
NT_166313	184966	.	C	A	11.1	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33	GT:PL:GQ	1/1:42,6,0:9
NT_166313	185022	.	C	T	9.31	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33	GT:PL:GQ	1/1:40,6,0:8
NT_166313	185114	.	G	A	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
NT_166313	185707	.	TGGGGGG	TGGGG	53.4	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=37;FQ=-43.5	GT:PL:GQ	1/1:93,9,0:16
NT_166313	186575	.	T	C	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
NT_166313	188906	.	G	C	3.02	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:30,3,0:4
NT_166313	189753	.	T	G	42	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=37;FQ=-36	GT:PL:GQ	1/1:74,9,0:16
NT_166313	189763	.	G	A	38	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=37;FQ=-36	GT:PL:GQ	1/1:70,9,0:16
NT_166313	190763	.	A	C	7.59	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=32;FQ=-33	GT:PL:GQ	1/1:38,6,0:7
NT_166313	190780	.	T	C	5.29	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=32;FQ=-33	GT:PL:GQ	1/1:35,6,0:6
NT_166313	191046	.	C	T	33.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-33	GT:PL:GQ	1/1:65,6,0:10
NT_166313	191075	.	C	G	32.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-33	GT:PL:GQ	1/1:64,6,0:10
NT_166313	206710	.	CGAGAGAGAGAGAGAGAGA	CGAGAGAGAGAGAGAGA	8.18	.	INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=4,2,2,0;MQ=37;FQ=10.8;PV4=1,1.5e-06,1,1	GT:PL:GQ	0/1:45,0,159:47
NT_166313	212911	.	C	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166313	242335	.	A	T	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
NT_166313	242381	.	G	C	3.54	.	DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
NT_166313	243035	.	G	T	8.44	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=25;FQ=-33	GT:PL:GQ	1/1:39,6,0:8
NT_166313	243084	.	A	T	18.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=25;FQ=-33	GT:PL:GQ	1/1:50,6,0:10
NT_166313	243235	.	T	A	13.9	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33	GT:PL:GQ	1/1:45,6,0:10
NT_166313	243340	.	C	G	15.1	.	DP=3;AF1=0.5008;CI95=0.5,0.5;DP4=1,0,2,0;MQ=37;FQ=-4.14;PV4=1,0.3,1,0.077	GT:PL:GQ	0/1:45,0,25:28
NT_161928	42786	.	C	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166378	24751	.	T	C	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
NT_166378	24753	.	C	T	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
NT_161926	91391	.	C	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_161926	91392	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166385	319808	.	G	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_165789	268949	.	A	G	130	.	DP=11;AF1=1;CI95=1,1;DP4=0,0,5,5;MQ=33;FQ=-57	GT:PL:GQ	1/1:163,30,0:57
NT_165789	268956	.	T	G	133	.	DP=11;AF1=1;CI95=1,1;DP4=0,0,5,5;MQ=33;FQ=-57	GT:PL:GQ	1/1:166,30,0:57
NT_165789	268973	.	G	A	102	.	DP=8;AF1=1;CI95=1,1;DP4=0,0,4,4;MQ=32;FQ=-51	GT:PL:GQ	1/1:135,24,0:45
NT_165789	269002	.	G	A	47.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=25;FQ=-39	GT:PL:GQ	1/1:80,12,0:21
NT_165789	269016	.	C	T	38	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=25;FQ=-36	GT:PL:GQ	1/1:70,9,0:16
NT_165789	269124	.	T	A	53.2	.	DP=9;AF1=0.5263;CI95=0.5,1;DP4=0,1,3,5;MQ=33;FQ=-17.1;PV4=1,5.2e-06,0.26,0.24	GT:PL:GQ	0/1:83,0,10:13
NT_165789	269148	.	A	G	9.53	.	DP=5;AF1=0.5008;CI95=0.5,0.5;DP4=0,1,2,1;MQ=28;FQ=-4.22;PV4=1,0.0014,0,0.27	GT:PL:GQ	0/1:39,0,25:29
NT_165789	269163	.	G	T	7.8	.	DP=3;AF1=0.5003;CI95=0.5,0.5;DP4=0,1,2,0;MQ=30;FQ=3.27;PV4=0.33,0.071,0,0.13	GT:PL:GQ	0/1:37,0,28:32
NT_165789	303609	.	T	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166361	150408	.	G	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166348	244139	.	T	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166348	244145	.	G	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166369	123725	.	T	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166417	80615	.	C	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166417	80639	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166383	378092	.	T	A	5.46	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:34,3,0:3
NT_166362	238907	.	T	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166362	238908	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_165754	250017	.	A	G	190	.	DP=22;AF1=1;CI95=1,1;DP4=0,0,11,8;MQ=37;FQ=-84	GT:PL:GQ	1/1:223,57,0:99
NT_165754	252055	.	T	A	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
NT_165754	293702	.	G	C	6.79	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-33	GT:PL:GQ	1/1:37,6,0:7
NT_165754	300330	.	C	A	139	.	DP=21;AF1=1;CI95=1,1;DP4=0,0,18,3;MQ=37;FQ=-90	GT:PL:GQ	1/1:172,63,0:99
NT_165754	300742	.	AGG	AGGG	3.8	.	INDEL;DP=19;AF1=0.5;CI95=0.5,0.5;DP4=2,7,3,0;MQ=37;FQ=5.8;PV4=0.045,0.32,1,1	GT:PL:GQ	0/1:39,0,152:38
NT_165754	300745	.	T	G	10.4	.	DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,7,5,0;MQ=35;FQ=13.2;PV4=0.0013,1.1e-06,0.038,1	GT:PL:GQ	0/1:40,0,128:42
NT_165754	304284	.	T	TC	12.7	.	INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,2,2,0;MQ=37;FQ=15.6;PV4=0.4,1,1,0.41	GT:PL:GQ	0/1:50,0,89:53
NT_165754	309950	.	A	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_165754	311521	.	A	AT	6.36	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=32;FQ=-40.5	GT:PL:GQ	1/1:44,6,0:7
NT_165754	329690	.	N	T	7.59	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-33	GT:PL:GQ	1/1:38,6,0:7
NT_165754	329691	.	N	G	7.59	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-33	GT:PL:GQ	1/1:38,6,0:7
NT_165754	329692	.	N	A	6.79	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-33	GT:PL:GQ	1/1:37,6,0:7
NT_165754	329693	.	N	C	26	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=37;FQ=-36	GT:PL:GQ	1/1:58,9,0:16
NT_165754	338325	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_161924	260016	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_165795	433385	.	G	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166370	455714	.	T	G	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
NT_166424	307990	.	T	A	6.98	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:36,3,0:4
NT_161877	518452	.	G	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_161877	518454	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166351	468564	.	A	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166408	488033	.	C	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166408	562716	.	A	G	6.98	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:36,3,0:4
NT_166349	214066	.	A	G	3.02	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:30,3,0:4
NT_166349	214070	.	T	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166391	47103	.	C	T	5.46	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:34,3,0:3
NT_165790	96824	.	T	G	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
NT_165790	96827	.	A	T	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
NT_166344	657504	.	A	C	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
NT_166371	140475	.	C	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_166371	140477	.	A	C	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
NT_166371	140491	.	C	A	5.46	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:34,3,0:3
NT_161895	283625	.	A	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_161895	744483	.	C	G	38	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=33;FQ=-36	GT:PL:GQ	1/1:70,9,0:16
NT_166404	51731	.	A	T	3.55	.	DP=2;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,1,0;MQ=37;FQ=-4.23;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,26:28
NT_161875	219900	.	G	A	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
NT_161875	219903	.	T	C	3.02	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:30,3,0:4
NT_161866	49262	.	C	G	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
NT_161866	49264	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_161866	49265	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_161872	293963	.	C	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_161872	616242	.	T	A	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
NT_161872	714587	.	C	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_161902	401831	.	T	C	6.98	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:36,3,0:4
NT_161902	923924	.	G	A	10.2	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=32;FQ=-33	GT:PL:GQ	1/1:41,6,0:8
NT_161937	232325	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_161937	232331	.	C	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_161937	310786	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
NT_161937	1343395	.	C	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
Y	356986	.	A	G	6.98	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:36,3,0:4
Y	362133	.	G	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
Y	372541	.	G	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
Y	385312	.	A	G	4.61	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-33	GT:PL:GQ	1/1:34,6,0:5
Y	385313	.	A	G	4.61	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-33	GT:PL:GQ	1/1:34,6,0:5
Y	472032	.	A	G	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
Y	503298	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
Y	529936	.	C	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
Y	534673	.	T	C	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
Y	601401	.	C	CAG	24.5	.	INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=5,1,2,1;MQ=37;FQ=27.5;PV4=1,0.061,1,0.00024	GT:PL:GQ	0/1:62,0,144:65
Y	602418	.	T	TGC	21.3	.	INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:60,6,0:10
Y	1448653	.	A	T	3.02	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:30,3,0:4
Y	2564922	.	C	G	4.61	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=25;FQ=-33	GT:PL:GQ	1/1:34,6,0:5
Y	2564933	.	A	T	5.29	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=25;FQ=-33	GT:PL:GQ	1/1:35,6,0:6
Y	2564937	.	T	C	4.61	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=25;FQ=-33	GT:PL:GQ	1/1:34,6,0:5
Y	2884117	.	T	C	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	3205820	.	G	A	158	.	DP=20;AF1=1;CI95=1,1;DP4=0,0,9,9;MQ=36;FQ=-81	GT:PL:GQ	1/1:191,54,0:99
19	3205836	.	A	G	220	.	DP=36;AF1=1;CI95=1,1;DP4=0,0,20,14;MQ=37;FQ=-129	GT:PL:GQ	1/1:253,102,0:99
19	3205943	.	G	C	152	.	DP=21;AF1=1;CI95=1,1;DP4=0,0,8,10;MQ=37;FQ=-81	GT:PL:GQ	1/1:185,54,0:99
19	3205957	.	G	C	80.1	.	DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,4;MQ=37;FQ=-45	GT:PL:GQ	1/1:113,18,0:33
19	3205995	.	T	C	67	.	DP=18;AF1=1;CI95=1,1;DP4=0,0,1,13;MQ=32;FQ=-69	GT:PL:GQ	1/1:100,42,0:81
19	3206052	.	A	G	120	.	DP=12;AF1=1;CI95=1,1;DP4=0,0,3,7;MQ=34;FQ=-57	GT:PL:GQ	1/1:153,30,0:57
19	3206060	.	T	A	71.1	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,3;MQ=33;FQ=-45	GT:PL:GQ	1/1:104,18,0:33
19	3206638	.	T	G	55.3	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,1;MQ=25;FQ=-42	GT:PL:GQ	1/1:88,15,0:27
19	3206671	.	T	C	53.4	.	DP=6;AF1=0.5554;CI95=0.5,1;DP4=1,0,4,1;MQ=25;FQ=-20;PV4=1,0.38,1,1	GT:PL:GQ	0/1:83,0,7:10
19	3206673	.	T	C	23	.	DP=6;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,1;MQ=25;FQ=18.3;PV4=1,0.39,1,1	GT:PL:GQ	0/1:53,0,46:48
19	3206703	.	G	A	64.3	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,1;MQ=25;FQ=-42	GT:PL:GQ	1/1:97,15,0:27
19	3281904	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	3352482	.	C	A	32.5	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=34;FQ=-39	GT:PL:GQ	1/1:65,12,0:21
19	3356313	.	AC	ACC	39.5	.	INDEL;DP=4;AF1=0.5016;CI95=0.5,0.5;DP4=1,0,0,3;MQ=37;FQ=-12.8;PV4=0.25,1,1,0.27	GT:PL:GQ	0/1:77,0,22:25
19	3362225	.	A	G	23	.	DP=5;AF1=0.5016;CI95=0.5,0.5;DP4=1,0,4,0;MQ=35;FQ=-6.18;PV4=1,0.014,0.34,0.022	GT:PL:GQ	0/1:53,0,22:25
19	3365671	.	AC	A	3.81	.	INDEL;DP=4;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,1,1;MQ=37;FQ=-7.67;PV4=1,0.16,1,0.012	GT:PL:GQ	0/1:39,0,28:33
19	3369050	.	G	GA	9.71	.	INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:48,6,0:8
19	3371339	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	3375209	.	A	AT	54	.	INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-46.5	GT:PL:GQ	1/1:94,12,0:21
19	3457052	.	CT	CTTT	4.42	.	INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=34;FQ=6.48;PV4=1,0.051,0.21,0.38	GT:PL:GQ	0/1:40,0,56:40
19	3462257	.	T	C	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
19	3490405	.	T	A	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	3490564	.	C	G	15.1	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=37;FQ=-36	GT:PL:GQ	1/1:47,9,0:14
19	3547993	.	T	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	3582830	.	T	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	3586482	.	T	G	58	.	DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,0,7,1;MQ=34;FQ=12.3;PV4=1,0.00069,0.18,1	GT:PL:GQ	0/1:88,0,39:42
19	3586484	.	A	C	56	.	DP=12;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,7,1;MQ=34;FQ=9.53;PV4=1,0.0044,0.18,1	GT:PL:GQ	0/1:86,0,36:39
19	3591114	.	CTGTG	CTG	47.5	.	INDEL;DP=5;AF1=0.5016;CI95=0.5,0.5;DP4=0,1,4,0;MQ=37;FQ=-12.8;PV4=0.2,0.12,1,0.25	GT:PL:GQ	0/1:85,0,22:25
19	3591123	.	T	G	11.3	.	DP=3;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,2,0;MQ=37;FQ=3.43;PV4=0.33,0,1,0.17	GT:PL:GQ	0/1:41,0,28:31
19	3591876	.	C	G	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	3596029	.	GACACACACACACACA	GACACACACACACA	15.6	.	INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,1,2,0;MQ=37;FQ=18.5;PV4=1,7.9e-05,1,1	GT:PL:GQ	0/1:53,0,90:56
19	3596048	.	TCACACACACACACACA	TCACACACACACACA	35.2	.	INDEL;DP=7;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:74,6,0:10
19	3610237	.	CG	CGGG	28.2	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:67,6,0:10
19	3612197	.	CGG	CGGG	12.7	.	INDEL;DP=3;AF1=0.5013;CI95=0.5,0.5;DP4=1,0,1,1;MQ=33;FQ=-11.8;PV4=1,0.43,0.33,0.33	GT:PL:GQ	0/1:50,0,23:26
19	3615652	.	C	G	7.8	.	DP=5;AF1=0.5003;CI95=0.5,0.5;DP4=0,1,0,2;MQ=33;FQ=3.27;PV4=1,0.046,0.33,0.32	GT:PL:GQ	0/1:37,0,28:32
19	3621243	.	A	G	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	3647660	.	C	A	3.41	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33	GT:PL:GQ	1/1:32,6,0:4
19	3649602	.	T	G	41.5	.	DP=9;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=32;FQ=-39	GT:PL:GQ	1/1:74,12,0:21
19	3649604	.	C	A	26	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=33;FQ=-36	GT:PL:GQ	1/1:58,9,0:16
19	3649607	.	T	G	31.5	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=32;FQ=-39	GT:PL:GQ	1/1:64,12,0:21
19	3673470	.	G	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	3682731	.	T	G	3.02	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:30,3,0:4
19	3784152	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	3817931	.	A	T	17.1	.	DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,6,1,1;MQ=37;FQ=20.1;PV4=0.42,1,1,7.9e-09	GT:PL:GQ	0/1:47,0,150:50
19	3885854	.	TT	TTAT	8.18	.	INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=37;FQ=10.5;PV4=1,0.26,1,0.36	GT:PL:GQ	0/1:45,0,56:46
19	3897463	.	C	CA	23.5	.	INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=4,3,0,4;MQ=37;FQ=26.5;PV4=0.19,0.02,1,2.5e-05	GT:PL:GQ	0/1:61,0,178:64
19	3899540	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	3903173	.	C	T	3.01	.	DP=13;AF1=0.4997;CI95=0.5,0.5;DP4=4,4,3,0;MQ=36;FQ=4.77;PV4=0.24,0.028,0.052,1	GT:PL:GQ	0/1:30,0,163:28
19	3903429	.	CTA	C	31.5	.	INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=4,2,3,0;MQ=37;FQ=34.5;PV4=0.5,1.4e-09,1,1	GT:PL:GQ	0/1:69,0,157:72
19	3903506	.	G	GCC	30.5	.	INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,3;MQ=35;FQ=33.4;PV4=1,1,0.19,1	GT:PL:GQ	0/1:68,0,87:71
19	3909282	.	CTG	CTGTG	22.5	.	INDEL;DP=6;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,1,1;MQ=37;FQ=-7.4;PV4=1,0.4,1,0.33	GT:PL:GQ	0/1:60,0,28:31
19	3909704	.	A	T	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	3909837	.	T	C	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	3937591	.	G	A	4.61	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-33	GT:PL:GQ	1/1:34,6,0:5
19	3944020	.	TA	T	6.55	.	INDEL;DP=3;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,1,1;MQ=33;FQ=-7.51;PV4=1,0.28,0.33,0	GT:PL:GQ	0/1:43,0,28:33
19	3955855	.	T	G	3.02	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:30,3,0:4
19	4012679	.	A	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	4036683	.	C	CCAT	16.6	.	INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,1;MQ=37;FQ=19.5;PV4=1,0.12,1,0.04	GT:PL:GQ	0/1:54,0,90:57
19	4097507	.	G	GCC	45.5	.	INDEL;DP=5;AF1=0.5032;CI95=0.5,0.5;DP4=1,0,4,0;MQ=35;FQ=-15.6;PV4=1,1,0.34,0.34	GT:PL:GQ	0/1:83,0,19:22
19	4097921	.	AG	A	16.6	.	INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,2,1;MQ=35;FQ=16;PV4=0.4,0.028,0.25,0.013	GT:PL:GQ	0/1:54,0,53:53
19	4103486	.	GT	GTCT	21.5	.	INDEL;DP=6;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,2,0;MQ=37;FQ=-7.4;PV4=0.33,0.41,1,0.016	GT:PL:GQ	0/1:59,0,28:31
19	4109610	.	A	G	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	4126040	.	GCCCCC	GCCCC	38.5	.	INDEL;DP=9;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=37;FQ=-55.5	GT:PL:GQ	1/1:79,21,0:39
19	4128088	.	T	C	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	4150222	.	T	TG	16.6	.	INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,3,2,1;MQ=36;FQ=19.5;PV4=1,0.35,0.085,4e-05	GT:PL:GQ	0/1:54,0,140:57
19	4192878	.	T	TG	159	.	INDEL;DP=17;AF1=1;CI95=0.5,1;DP4=0,1,9,3;MQ=37;FQ=-40.5;PV4=0.31,0.48,1,0.4	GT:PL:GQ	1/1:198,6,0:10
19	4192885	.	T	A	8.65	.	DP=9;AF1=0.5008;CI95=0.5,0.5;DP4=0,1,3,0;MQ=37;FQ=-4.25;PV4=0.25,0.045,1,0.44	GT:PL:GQ	0/1:38,0,25:29
19	4193254	.	T	C	111	.	DP=9;AF1=1;CI95=1,1;DP4=0,0,5,2;MQ=32;FQ=-48	GT:PL:GQ	1/1:144,21,0:39
19	4194973	.	CT	C	114	.	INDEL;DP=14;AF1=0.5;CI95=0.5,0.5;DP4=4,2,3,3;MQ=37;FQ=113;PV4=1,2.2e-05,1,0.018	GT:PL:GQ	0/1:152,0,150:99
19	4218544	.	GACACACACACACACACACACAC	GACACACACACACACACACAC	20.5	.	INDEL;DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,10,0,3;MQ=37;FQ=23.5;PV4=1,0.28,1,1	GT:PL:GQ	0/1:58,0,144:61
19	4265650	.	A	C	15.1	.	DP=8;AF1=0.5002;CI95=0.5,0.5;DP4=1,1,0,3;MQ=35;FQ=5.35;PV4=0.4,1,0.25,1	GT:PL:GQ	0/1:45,0,31:34
19	4275479	.	A	G	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	4287266	.	TG	T	11.5	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=32;FQ=-40.5	GT:PL:GQ	1/1:50,6,0:9
19	4288411	.	C	A	14.2	.	DP=13;AF1=0.5;CI95=0.5,0.5;DP4=4,5,1,3;MQ=36;FQ=17.1;PV4=1,0.00097,1,1	GT:PL:GQ	0/1:44,0,185:47
19	4293399	.	G	A	3.01	.	DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=37;FQ=3.25;PV4=1,1,1,1	GT:PL:GQ	0/1:30,0,31:28
19	4293435	.	T	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	4319284	.	G	GCCA	39.4	.	INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=33;FQ=-43.5	GT:PL:GQ	1/1:79,9,0:16
19	4320148	.	AT	A	53.4	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=33;FQ=-43.5	GT:PL:GQ	1/1:93,9,0:16
19	4328716	.	C	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	4356928	.	T	C	9.49	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=37;FQ=-36	GT:PL:GQ	1/1:41,9,0:12
19	4395270	.	T	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	4397535	.	G	A	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	4616344	.	A	G	31.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:63,6,0:10
19	4619199	.	G	GACA	28.2	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:67,6,0:10
19	4746969	.	G	GA	21.3	.	INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:60,6,0:10
19	4784161	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	4785570	.	G	C	7.8	.	DP=3;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,1,1;MQ=37;FQ=3.27;PV4=1,0.034,1,0.025	GT:PL:GQ	0/1:37,0,28:32
19	4799879	.	T	C	34.8	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:66,6,0:10
19	4888267	.	A	T	3.54	.	DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	4918151	.	CT	CTT	17.3	.	INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:56,6,0:10
19	4923064	.	CA	C	16.6	.	INDEL;DP=4;AF1=0.5008;CI95=0.5,0.5;DP4=0,1,1,2;MQ=34;FQ=-9.99;PV4=1,0.11,0.33,0.33	GT:PL:GQ	0/1:54,0,25:28
19	4964673	.	G	GGA	7.98	.	INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=32;FQ=-40.5	GT:PL:GQ	1/1:46,6,0:8
19	5045349	.	G	GT	11.8	.	INDEL;DP=4;AF1=0.5008;CI95=0.5,0.5;DP4=1,0,1,1;MQ=37;FQ=-10;PV4=1,0.47,1,1	GT:PL:GQ	0/1:49,0,25:29
19	5046911	.	G	GA	35.2	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:74,6,0:10
19	5048333	.	A	G	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
19	5081755	.	G	A	20	.	DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,3,1,1;MQ=37;FQ=23;PV4=1,0.22,1,1	GT:PL:GQ	0/1:50,0,107:53
19	5111720	.	C	CAG	28.2	.	INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:67,6,0:10
19	5113937	.	TC	TCC	21.3	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:60,6,0:10
19	5116885	.	T	A	3.01	.	DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,1,0;MQ=37;FQ=3.25;PV4=1,1,1,1	GT:PL:GQ	0/1:30,0,31:28
19	5140839	.	T	A	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	5142716	.	T	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	5152822	.	T	TC	77.5	.	INDEL;DP=8;AF1=0.5064;CI95=0.5,0.5;DP4=1,0,6,0;MQ=37;FQ=-18.6;PV4=1,0.48,1,0.0022	GT:PL:GQ	0/1:115,0,16:19
19	5152825	.	A	C	3.02	.	DP=6;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,2,0;MQ=37;FQ=-3.6;PV4=1,0.057,1,0.052	GT:PL:GQ	0/1:30,0,28:28
19	5154577	.	C	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	5226915	.	T	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	5245293	.	G	A	5.46	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:34,3,0:3
19	5245305	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	5264850	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	5274427	.	T	C	3.01	.	DP=54;AF1=0.4997;CI95=0.5,0.5;DP4=22,18,6,5;MQ=37;FQ=4.77;PV4=1,1e-18,1,1	GT:PL:GQ	0/1:30,0,255:28
19	5274978	.	C	CG	99.7	.	INDEL;DP=10;AF1=1;CI95=0.5,1;DP4=0,0,4,1;MQ=37;FQ=-49.5	GT:PL:GQ	1/1:140,15,0:27
19	5275059	.	C	CA	30.2	.	INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:69,6,0:10
19	5279268	.	C	CTT	40.5	.	INDEL;DP=5;AF1=0.5008;CI95=0.5,0.5;DP4=1,0,3,0;MQ=37;FQ=-9.98;PV4=1,0.46,1,0.0034	GT:PL:GQ	0/1:78,0,25:28
19	5279373	.	GT	GTCT	115	.	INDEL;DP=11;AF1=0.5263;CI95=0.5,1;DP4=1,0,7,1;MQ=35;FQ=-24.5;PV4=1,1,0.31,0.44	GT:PL:GQ	0/1:152,0,10:13
19	5279469	.	C	CG	12.7	.	INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,3;MQ=35;FQ=13.9;PV4=0.4,0.027,0.25,0.25	GT:PL:GQ	0/1:50,0,53:51
19	5293078	.	A	G	3.02	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:30,3,0:4
19	5293322	.	A	G	22	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=37;FQ=-36	GT:PL:GQ	1/1:54,9,0:15
19	5299338	.	T	C	6.98	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:36,3,0:4
19	5324189	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	5324197	.	C	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	5324249	.	G	C	5.29	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33	GT:PL:GQ	1/1:35,6,0:6
19	5325094	.	T	C	12	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=32;FQ=-33	GT:PL:GQ	1/1:43,6,0:9
19	5325106	.	A	G	25.8	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=32;FQ=-33	GT:PL:GQ	1/1:57,6,0:10
19	5325161	.	T	C	75.1	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,4;MQ=35;FQ=-45	GT:PL:GQ	1/1:108,18,0:33
19	5334753	.	G	A	122	.	DP=10;AF1=1;CI95=1,1;DP4=0,0,3,7;MQ=29;FQ=-57	GT:PL:GQ	1/1:155,30,0:57
19	5334800	.	G	C	101	.	DP=9;AF1=1;CI95=1,1;DP4=0,0,2,7;MQ=28;FQ=-54	GT:PL:GQ	1/1:134,27,0:51
19	5334810	.	T	C	29	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=25;FQ=-36	GT:PL:GQ	1/1:61,9,0:16
19	5371182	.	ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	28.5	.	INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,4,0,3;MQ=37;FQ=31.5;PV4=1,0.24,1,0.4	GT:PL:GQ	0/1:66,0,107:69
19	5415628	.	A	G	58.2	.	DP=5;AF1=0.5207;CI95=0.5,1;DP4=0,1,2,2;MQ=30;FQ=-16.1;PV4=1,1,0.14,1	GT:PL:GQ	0/1:88,0,11:14
19	5415652	.	C	G	19.1	.	DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,2;MQ=33;FQ=16.7;PV4=1,0.0019,0.11,1	GT:PL:GQ	0/1:49,0,45:47
19	5415658	.	A	T	35	.	DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,2;MQ=33;FQ=15.1;PV4=1,1,0.11,1	GT:PL:GQ	0/1:65,0,42:45
19	5415664	.	G	A	14.2	.	DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,2;MQ=33;FQ=16.1;PV4=1,0.0034,0.11,1	GT:PL:GQ	0/1:44,0,50:46
19	5423558	.	A	AT	121	.	INDEL;DP=15;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=37;FQ=-61.5	GT:PL:GQ	1/1:162,27,0:51
19	5424274	.	GG	GGAG	46.5	.	INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,3,4,1;MQ=37;FQ=49.5;PV4=0.52,0.014,1,1	GT:PL:GQ	0/1:84,0,134:87
19	5426086	.	A	C	14.2	.	DP=33;AF1=0.5;CI95=0.5,0.5;DP4=15,2,0,9;MQ=37;FQ=17.1;PV4=1.8e-05,1.7e-09,1,1	GT:PL:GQ	0/1:44,0,212:47
19	5462528	.	A	AGG	45.4	.	INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=37;FQ=-43.5	GT:PL:GQ	1/1:85,9,0:16
19	5479300	.	C	A	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	5480150	.	G	A	7.59	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=32;FQ=-33	GT:PL:GQ	1/1:38,6,0:7
19	5533657	.	C	G	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	5535804	.	C	T	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
19	5580726	.	C	T	3.02	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:30,3,0:4
19	5640300	.	CA	C	77.5	.	INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,3,1,4;MQ=37;FQ=71;PV4=1,0.049,1,0.065	GT:PL:GQ	0/1:115,0,106:99
19	5642274	.	A	G	9.52	.	DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,6,0,3;MQ=37;FQ=12.3;PV4=1,0.0039,1,0.22	GT:PL:GQ	0/1:39,0,152:41
19	5646794	.	C	CAA	4.42	.	INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=5,2,0,4;MQ=36;FQ=6.56;PV4=0.061,0.00082,0.1,4.2e-05	GT:PL:GQ	0/1:40,0,170:40
19	5652568	.	T	TTC	47.5	.	INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=5,1,4,0;MQ=37;FQ=50.5;PV4=1,0.33,1,0.035	GT:PL:GQ	0/1:85,0,142:88
19	5652874	.	CT	CTT	45.5	.	INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,3,4,0;MQ=36;FQ=34.3;PV4=0.029,0.31,0.22,1	GT:PL:GQ	0/1:83,0,69:72
19	5655793	.	T	TTTG	15.6	.	INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,1,2,0;MQ=37;FQ=18.5;PV4=1,0.031,1,0.0029	GT:PL:GQ	0/1:53,0,90:56
19	5671522	.	C	CT	8.18	.	INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,1,0,2;MQ=37;FQ=10.8;PV4=0.4,0.24,1,0.028	GT:PL:GQ	0/1:45,0,113:47
19	5673355	.	C	G	16.1	.	DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,1;MQ=37;FQ=18.7;PV4=1,0.012,1,0.00027	GT:PL:GQ	0/1:46,0,56:48
19	5673587	.	AGCT	AGCTTGCT	15.6	.	INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,2,0;MQ=37;FQ=18.5;PV4=0.1,0.4,1,0.18	GT:PL:GQ	0/1:53,0,79:56
19	5700971	.	GT	G	13.7	.	INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,2;MQ=37;FQ=15.4;PV4=0.33,0.057,1,0.00094	GT:PL:GQ	0/1:51,0,56:53
19	5722189	.	A	T	15.9	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33	GT:PL:GQ	1/1:47,6,0:10
19	5747411	.	A	ATT	28.2	.	INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:67,6,0:10
19	5751303	.	G	GAC	36.5	.	INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,1,3,0;MQ=37;FQ=39.5;PV4=1,1,1,0.0091	GT:PL:GQ	0/1:74,0,110:77
19	5765309	.	C	T	3.02	.	DP=3;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,0,2;MQ=37;FQ=-3.6;PV4=0.33,0.14,1,1	GT:PL:GQ	0/1:30,0,28:28
19	5766155	.	T	TCCC	5.8	.	INDEL;DP=3;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,0,2;MQ=37;FQ=-7.54;PV4=0.33,0.044,1,1	GT:PL:GQ	0/1:42,0,28:33
19	5802669	.	CCT	CCTCT	23.5	.	INDEL;DP=11;AF1=0.5001;CI95=0.5,0.5;DP4=1,1,3,0;MQ=33;FQ=-3.84;PV4=0.4,1,0.11,1	GT:PL:GQ	0/1:61,0,33:36
19	5837235	.	G	A	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	5853932	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	5894371	.	G	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	5899740	.	A	G	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	5902359	.	GT	G	20.5	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=33;FQ=-43.5	GT:PL:GQ	1/1:60,9,0:15
19	5905108	.	G	C	3.54	.	DP=2;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,1,0;MQ=37;FQ=-3.4;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,28:29
19	5951787	.	C	T	18	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=37;FQ=-36	GT:PL:GQ	1/1:50,9,0:15
19	5956115	.	CT	CTT	20.5	.	INDEL;DP=4;AF1=0.501;CI95=0.5,0.5;DP4=0,1,1,1;MQ=37;FQ=-10.9;PV4=1,1,1,0.33	GT:PL:GQ	0/1:58,0,24:27
19	5956116	.	TA	T	20.5	.	INDEL;DP=4;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,1,1;MQ=37;FQ=-7.4;PV4=1,0.24,1,0.31	GT:PL:GQ	0/1:58,0,28:31
19	5988978	.	AGG	AGGGG	95	.	INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=37;FQ=-46.5	GT:PL:GQ	1/1:135,12,0:21
19	5990457	.	G	GC	48.5	.	INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,1;MQ=37;FQ=18.5;PV4=1,1,1,0.11	GT:PL:GQ	0/1:86,0,53:56
19	5992164	.	A	T	6.98	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:36,3,0:4
19	6011296	.	CTT	CTTT	89	.	INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=37;FQ=-46.5	GT:PL:GQ	1/1:129,12,0:21
19	6047971	.	C	T	141	.	DP=14;AF1=0.5;CI95=0.5,0.5;DP4=3,3,2,6;MQ=37;FQ=114;PV4=0.58,0.44,1,1	GT:PL:GQ	0/1:171,0,141:99
19	6071701	.	A	T	8.64	.	DP=10;AF1=0.5;CI95=0.5,0.5;DP4=3,1,3,0;MQ=36;FQ=11.3;PV4=1,0.12,1,1	GT:PL:GQ	0/1:38,0,89:40
19	6084061	.	CT	CTT	14.6	.	INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,1,2,0;MQ=37;FQ=16.4;PV4=1,1,1,0.21	GT:PL:GQ	0/1:52,0,57:54
19	6116433	.	G	T	3.01	.	DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=3.25;PV4=1,1,1,1	GT:PL:GQ	0/1:30,0,31:28
19	6152712	.	A	G	34	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=30;FQ=-36	GT:PL:GQ	1/1:66,9,0:16
19	6152741	.	T	C	191	.	DP=12;AF1=1;CI95=1,1;DP4=0,0,8,3;MQ=34;FQ=-60	GT:PL:GQ	1/1:224,33,0:63
19	6152749	.	T	C	167	.	DP=17;AF1=1;CI95=1,1;DP4=0,0,11,5;MQ=35;FQ=-75	GT:PL:GQ	1/1:200,48,0:93
19	6152890	.	T	C	100	.	DP=7;AF1=1;CI95=1,1;DP4=0,0,3,4;MQ=37;FQ=-48	GT:PL:GQ	1/1:133,21,0:39
19	6152982	.	G	A	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
19	6153036	.	C	T	55.5	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=37;FQ=-39	GT:PL:GQ	1/1:88,12,0:21
19	6153077	.	C	T	222	.	DP=20;AF1=1;CI95=1,1;DP4=0,0,9,11;MQ=37;FQ=-87	GT:PL:GQ	1/1:255,60,0:99
19	6153163	.	T	C	194	.	DP=9;AF1=1;CI95=1,1;DP4=0,0,3,6;MQ=37;FQ=-54	GT:PL:GQ	1/1:227,27,0:51
19	6175510	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	6228939	.	CA	C	78	.	INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=34;FQ=-46.5	GT:PL:GQ	1/1:118,12,0:21
19	6230906	.	C	G	15.1	.	DP=5;AF1=0.5008;CI95=0.5,0.5;DP4=1,0,0,3;MQ=37;FQ=-4.14;PV4=0.25,0.0037,1,0.1	GT:PL:GQ	0/1:45,0,25:28
19	6249082	.	T	C	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	6251864	.	G	GA	28.2	.	INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:67,6,0:10
19	6280998	.	T	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	6288939	.	C	A	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
19	6289471	.	A	G	18.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:50,6,0:10
19	6293530	.	C	T	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	6294628	.	T	TCC	70	.	INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-46.5	GT:PL:GQ	1/1:110,12,0:21
19	6313685	.	A	G	4.77	.	DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,1,1;MQ=37;FQ=6.98;PV4=1,0.00041,1,0.0011	GT:PL:GQ	0/1:33,0,62:33
19	6314781	.	G	C	44.1	.	DP=8;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=32;FQ=-45	GT:PL:GQ	1/1:77,18,0:33
19	6316439	.	G	GA	11.7	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=33;FQ=-43.5	GT:PL:GQ	1/1:51,9,0:13
19	6322372	.	G	GC	10.6	.	INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:49,6,0:9
19	6355840	.	C	CAG	11.8	.	INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,1,2,0;MQ=37;FQ=14.6;PV4=1,1,1,0.45	GT:PL:GQ	0/1:49,0,85:51
19	6363411	.	G	A	6.98	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:36,3,0:4
19	6365792	.	G	GT	47.5	.	INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=6,3,4,1;MQ=37;FQ=50.5;PV4=1,0.08,1,0.055	GT:PL:GQ	0/1:85,0,201:88
19	6365797	.	A	C	4.13	.	DP=14;AF1=0.4998;CI95=0.5,0.5;DP4=6,3,4,0;MQ=37;FQ=6.2;PV4=0.5,5.7e-06,1,0.1	GT:PL:GQ	0/1:32,0,196:31
19	6372298	.	T	C	18	.	DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=33;FQ=-36	GT:PL:GQ	1/1:50,9,0:15
19	6372626	.	G	GCC	16.6	.	INDEL;DP=8;AF1=0.5008;CI95=0.5,0.5;DP4=1,0,3,0;MQ=37;FQ=-9.99;PV4=1,0.061,1,0.0096	GT:PL:GQ	0/1:54,0,25:28
19	6374284	.	G	A	13.2	.	DP=7;AF1=0.5016;CI95=0.5,0.5;DP4=0,1,3,1;MQ=33;FQ=-6.21;PV4=0.4,0.012,0.25,1	GT:PL:GQ	0/1:43,0,22:25
19	6374286	.	A	C	4.13	.	DP=7;AF1=0.5006;CI95=0.5,0.5;DP4=0,1,3,0;MQ=34;FQ=-4.62;PV4=0.25,0.031,0.33,1	GT:PL:GQ	0/1:32,0,25:29
19	6386021	.	T	TGGC	11.8	.	INDEL;DP=3;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,0,2;MQ=33;FQ=-7.43;PV4=0.33,0.44,0.33,0.33	GT:PL:GQ	0/1:49,0,28:32
19	6390455	.	C	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	6502037	.	T	G	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	6592212	.	A	G	6.02	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=32;FQ=-33	GT:PL:GQ	1/1:36,6,0:6
19	6642108	.	C	T	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
19	6905075	.	A	AGC	7.98	.	INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:46,6,0:8
19	6909201	.	T	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	6915048	.	T	G	5.29	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33	GT:PL:GQ	1/1:35,6,0:6
19	6981442	.	CT	CTT	56.7	.	INDEL;DP=13;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=33;FQ=-49.5	GT:PL:GQ	1/1:97,15,0:27
19	6986843	.	A	AG	12.7	.	INDEL;DP=5;AF1=0.5008;CI95=0.5,0.5;DP4=1,0,1,2;MQ=37;FQ=-10;PV4=1,0.13,1,0.33	GT:PL:GQ	0/1:50,0,25:28
19	6992893	.	T	C	26	.	DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,2,1,1;MQ=37;FQ=29;PV4=1,0.27,1,0.42	GT:PL:GQ	0/1:56,0,118:59
19	7032496	.	G	A	20.8	.	DP=6;AF1=0.6243;CI95=0.5,1;DP4=0,1,4,0;MQ=30;FQ=-23;PV4=0.2,1,0.14,0.037	GT:PL:GQ	0/1:50,0,4:7
19	7032498	.	T	C	19.1	.	DP=5;AF1=0.501;CI95=0.5,0.5;DP4=0,1,3,0;MQ=28;FQ=-4.76;PV4=0.25,0.1,0,0.0026	GT:PL:GQ	0/1:49,0,24:27
19	7039010	.	CT	C	30.2	.	INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:69,6,0:10
19	7052925	.	TCC	TCCCC	11.8	.	INDEL;DP=3;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,2,0;MQ=33;FQ=-7.43;PV4=1,0.4,0.33,1	GT:PL:GQ	0/1:49,0,28:32
19	7053458	.	CTT	CTTT	10.8	.	INDEL;DP=3;AF1=0.501;CI95=0.5,0.5;DP4=0,1,1,1;MQ=37;FQ=-10.9;PV4=1,0.17,1,0.024	GT:PL:GQ	0/1:48,0,24:28
19	7074272	.	TA	T	4.42	.	INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,2,2,0;MQ=37;FQ=6.56;PV4=0.4,1,1,0.099	GT:PL:GQ	0/1:40,0,90:40
19	7096313	.	CT	CTT	28.5	.	INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,2,1;MQ=37;FQ=20.2;PV4=1,0.26,1,0.06	GT:PL:GQ	0/1:66,0,55:58
19	7108797	.	GT	G	24.2	.	INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:63,6,0:10
19	7109279	.	CT	CTT	63	.	INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=34;FQ=-46.5	GT:PL:GQ	1/1:103,12,0:21
19	7273732	.	G	GC	50.5	.	INDEL;DP=7;AF1=0.504;CI95=0.5,0.5;DP4=0,1,0,4;MQ=37;FQ=-16.6;PV4=1,1,1,0.0018	GT:PL:GQ	0/1:88,0,18:21
19	7273860	.	ACCT	ACCTCCT	33.5	.	INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,3;MQ=35;FQ=24.2;PV4=0.4,1,0.25,0.021	GT:PL:GQ	0/1:71,0,59:62
19	7322919	.	G	C	5.46	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:34,3,0:3
19	7351944	.	T	A	4.77	.	DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,2,0;MQ=37;FQ=6.98;PV4=1,0.1,1,0.18	GT:PL:GQ	0/1:33,0,61:33
19	7359479	.	CT	CTT	41.4	.	INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=37;FQ=-43.5	GT:PL:GQ	1/1:81,9,0:16
19	7361488	.	T	TC	8.83	.	INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=32;FQ=-40.5	GT:PL:GQ	1/1:47,6,0:8
19	7401873	.	A	T	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	7435993	.	G	A	3.01	.	DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=37;FQ=3.25;PV4=1,1,1,1	GT:PL:GQ	0/1:30,0,31:28
19	7446286	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	7450404	.	G	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	7451189	.	G	C	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	7459826	.	T	C	3.54	.	DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=3.25;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,30:29
19	7473416	.	T	C	212	.	DP=12;AF1=1;CI95=1,1;DP4=0,0,4,6;MQ=37;FQ=-57	GT:PL:GQ	1/1:245,30,0:57
19	7533049	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	7559363	.	G	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	7596698	.	G	A	24	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=37;FQ=-36	GT:PL:GQ	1/1:56,9,0:15
19	7609641	.	G	T	49	.	DP=25;AF1=0.5;CI95=0.5,0.5;DP4=7,3,0,10;MQ=37;FQ=52;PV4=0.0031,5.7e-05,1,0.46	GT:PL:GQ	0/1:79,0,183:82
19	7609735	.	A	G	60	.	DP=28;AF1=0.5;CI95=0.5,0.5;DP4=11,5,5,6;MQ=37;FQ=63;PV4=0.26,2.6e-15,1,0.22	GT:PL:GQ	0/1:90,0,255:93
19	7609740	.	A	G	141	.	DP=27;AF1=0.5;CI95=0.5,0.5;DP4=7,2,9,9;MQ=37;FQ=130;PV4=0.23,6.6e-13,1,1	GT:PL:GQ	0/1:171,0,157:99
19	7610022	.	A	G	68	.	DP=22;AF1=0.5;CI95=0.5,0.5;DP4=6,8,3,5;MQ=37;FQ=71;PV4=1,0.013,1,1	GT:PL:GQ	0/1:98,0,225:99
19	7612605	.	A	G	79	.	DP=43;AF1=0.5;CI95=0.5,0.5;DP4=9,19,6,7;MQ=37;FQ=82;PV4=0.49,5e-12,0.072,0.43	GT:PL:GQ	0/1:109,0,255:99
19	7672449	.	T	C	3.54	.	DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=3.25;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,30:29
19	7742879	.	T	C	155	.	DP=13;AF1=1;CI95=1,1;DP4=0,0,3,10;MQ=37;FQ=-66	GT:PL:GQ	1/1:188,39,0:75
19	7742923	.	T	C	222	.	DP=29;AF1=1;CI95=1,1;DP4=0,0,10,16;MQ=37;FQ=-105	GT:PL:GQ	1/1:255,78,0:99
19	7742993	.	A	G	222	.	DP=39;AF1=1;CI95=1,1;DP4=0,0,24,14;MQ=37;FQ=-141	GT:PL:GQ	1/1:255,114,0:99
19	7743097	.	G	A	222	.	DP=36;AF1=1;CI95=1,1;DP4=0,0,12,24;MQ=37;FQ=-135	GT:PL:GQ	1/1:255,108,0:99
19	7743265	.	A	G	143	.	DP=17;AF1=1;CI95=1,1;DP4=0,0,8,6;MQ=37;FQ=-69	GT:PL:GQ	1/1:176,42,0:81
19	7743284	.	A	G	102	.	DP=7;AF1=1;CI95=1,1;DP4=0,0,4,3;MQ=37;FQ=-48	GT:PL:GQ	1/1:135,21,0:39
19	8034536	.	A	G	42.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:74,6,0:10
19	8050872	.	T	G	87.1	.	DP=7;AF1=1;CI95=1,1;DP4=0,0,2,5;MQ=25;FQ=-48	GT:PL:GQ	1/1:120,21,0:39
19	8050884	.	T	C	104	.	DP=8;AF1=1;CI95=1,1;DP4=0,0,2,6;MQ=25;FQ=-51	GT:PL:GQ	1/1:137,24,0:45
19	8050914	.	A	G	70	.	DP=11;AF1=1;CI95=1,1;DP4=0,0,2,9;MQ=29;FQ=-60	GT:PL:GQ	1/1:103,33,0:63
19	8050917	.	G	A	103	.	DP=12;AF1=1;CI95=1,1;DP4=0,0,2,9;MQ=29;FQ=-60	GT:PL:GQ	1/1:136,33,0:63
19	8050932	.	A	G	110	.	DP=13;AF1=1;CI95=1,1;DP4=0,0,3,10;MQ=30;FQ=-66	GT:PL:GQ	1/1:143,39,0:75
19	8050976	.	G	T	182	.	DP=19;AF1=1;CI95=1,1;DP4=0,0,4,15;MQ=36;FQ=-84	GT:PL:GQ	1/1:215,57,0:99
19	8050985	.	T	TA	214	.	INDEL;DP=20;AF1=1;CI95=1,1;DP4=0,0,4,16;MQ=37;FQ=-94.5	GT:PL:GQ	1/1:255,60,0:99
19	8050996	.	T	C	169	.	DP=19;AF1=1;CI95=1,1;DP4=0,0,4,15;MQ=36;FQ=-84	GT:PL:GQ	1/1:202,57,0:99
19	8051050	.	G	A	103	.	DP=19;AF1=1;CI95=1,1;DP4=0,0,6,12;MQ=35;FQ=-81	GT:PL:GQ	1/1:136,54,0:99
19	8051066	.	G	A	122	.	DP=10;AF1=1;CI95=1,1;DP4=0,0,3,7;MQ=34;FQ=-57	GT:PL:GQ	1/1:155,30,0:57
19	8051084	.	T	C	46.5	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=28;FQ=-39	GT:PL:GQ	1/1:79,12,0:21
19	8051096	.	A	G	19	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=30;FQ=-36	GT:PL:GQ	1/1:51,9,0:15
19	8051106	.	T	G	13	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-33	GT:PL:GQ	1/1:44,6,0:9
19	8051236	.	G	A	93.1	.	DP=7;AF1=1;CI95=1,1;DP4=0,0,4,3;MQ=27;FQ=-48	GT:PL:GQ	1/1:126,21,0:39
19	8051264	.	G	A	52.1	.	DP=7;AF1=1;CI95=0.5,1;DP4=0,0,4,2;MQ=25;FQ=-45	GT:PL:GQ	1/1:85,18,0:33
19	8051283	.	T	A	87.1	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,2;MQ=25;FQ=-45	GT:PL:GQ	1/1:120,18,0:33
19	8051315	.	A	G	80.1	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,2;MQ=25;FQ=-45	GT:PL:GQ	1/1:113,18,0:33
19	8051323	.	C	G	28	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=25;FQ=-36	GT:PL:GQ	1/1:60,9,0:16
19	8051467	.	G	A	13	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=25;FQ=-33	GT:PL:GQ	1/1:44,6,0:9
19	8051469	.	C	T	9.31	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=25;FQ=-33	GT:PL:GQ	1/1:40,6,0:8
19	8051498	.	T	A	147	.	DP=11;AF1=1;CI95=1,1;DP4=0,0,4,7;MQ=26;FQ=-60	GT:PL:GQ	1/1:180,33,0:63
19	8051502	.	C	T	113	.	DP=12;AF1=1;CI95=1,1;DP4=0,0,4,5;MQ=25;FQ=-54	GT:PL:GQ	1/1:146,27,0:51
19	8051544	.	G	A	112	.	DP=14;AF1=1;CI95=1,1;DP4=0,0,3,10;MQ=29;FQ=-66	GT:PL:GQ	1/1:145,39,0:75
19	8051546	.	T	C	104	.	DP=13;AF1=1;CI95=1,1;DP4=0,0,3,10;MQ=29;FQ=-66	GT:PL:GQ	1/1:137,39,0:75
19	8051574	.	T	C	192	.	DP=13;AF1=1;CI95=1,1;DP4=0,0,3,10;MQ=29;FQ=-66	GT:PL:GQ	1/1:225,39,0:75
19	8051593	.	T	C	45.3	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=35;FQ=-42	GT:PL:GQ	1/1:78,15,0:27
19	8100673	.	C	G	3.54	.	DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=3.25;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,30:29
19	8326732	.	GA	G	45	.	INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=32;FQ=-46.5	GT:PL:GQ	1/1:85,12,0:21
19	8326738	.	T	A	12.3	.	DP=10;AF1=0.5012;CI95=0.5,0.5;DP4=1,0,0,3;MQ=32;FQ=-5.48;PV4=0.25,0.09,0.21,1	GT:PL:GQ	0/1:42,0,23:26
19	8326742	.	A	C	77.1	.	DP=16;AF1=1;CI95=0.5,1;DP4=0,0,2,4;MQ=32;FQ=-45	GT:PL:GQ	1/1:110,18,0:33
19	8347286	.	A	G	25	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=30;FQ=-36	GT:PL:GQ	1/1:57,9,0:15
19	8347289	.	A	C	41.5	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=32;FQ=-39	GT:PL:GQ	1/1:74,12,0:21
19	8347296	.	T	C	118	.	DP=7;AF1=1;CI95=0.5,1;DP4=0,0,4,2;MQ=33;FQ=-45	GT:PL:GQ	1/1:151,18,0:33
19	8347384	.	G	GA	214	.	INDEL;DP=29;AF1=1;CI95=1,1;DP4=0,0,23,6;MQ=37;FQ=-122	GT:PL:GQ	1/1:255,87,0:99
19	8347394	.	T	A	222	.	DP=28;AF1=1;CI95=1,1;DP4=0,0,22,5;MQ=37;FQ=-108	GT:PL:GQ	1/1:255,81,0:99
19	8347399	.	C	G	167	.	DP=27;AF1=1;CI95=1,1;DP4=0,0,20,5;MQ=37;FQ=-102	GT:PL:GQ	1/1:200,75,0:99
19	8347408	.	C	G	222	.	DP=23;AF1=1;CI95=1,1;DP4=0,0,17,5;MQ=37;FQ=-93	GT:PL:GQ	1/1:255,66,0:99
19	8347594	.	A	G	78.1	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,3;MQ=25;FQ=-45	GT:PL:GQ	1/1:111,18,0:33
19	8347628	.	A	G	108	.	DP=8;AF1=1;CI95=1,1;DP4=0,0,5,3;MQ=28;FQ=-51	GT:PL:GQ	1/1:141,24,0:45
19	8347638	.	G	T	99	.	DP=8;AF1=1;CI95=1,1;DP4=0,0,5,3;MQ=28;FQ=-51	GT:PL:GQ	1/1:132,24,0:45
19	8347649	.	T	C	107	.	DP=8;AF1=1;CI95=1,1;DP4=0,0,5,3;MQ=28;FQ=-51	GT:PL:GQ	1/1:140,24,0:45
19	8347659	.	T	C	106	.	DP=8;AF1=1;CI95=1,1;DP4=0,0,5,3;MQ=28;FQ=-51	GT:PL:GQ	1/1:139,24,0:45
19	8347769	.	T	G	26	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=25;FQ=-36	GT:PL:GQ	1/1:58,9,0:16
19	8347801	.	A	G	150	.	DP=8;AF1=1;CI95=1,1;DP4=0,0,4,4;MQ=30;FQ=-51	GT:PL:GQ	1/1:183,24,0:45
19	8347804	.	A	G	106	.	DP=8;AF1=1;CI95=1,1;DP4=0,0,4,4;MQ=30;FQ=-51	GT:PL:GQ	1/1:139,24,0:45
19	8347809	.	T	C	79	.	DP=8;AF1=1;CI95=1,1;DP4=0,0,4,4;MQ=30;FQ=-51	GT:PL:GQ	1/1:112,24,0:45
19	8347870	.	T	C	149	.	DP=9;AF1=1;CI95=1,1;DP4=0,0,4,4;MQ=30;FQ=-51	GT:PL:GQ	1/1:182,24,0:45
19	8347993	.	A	C	78	.	DP=13;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=25;FQ=-57	GT:PL:GQ	1/1:111,30,0:57
19	8348001	.	T	G	86	.	DP=18;AF1=1;CI95=1,1;DP4=0,0,0,16;MQ=27;FQ=-75	GT:PL:GQ	1/1:119,48,0:93
19	8348026	.	G	A	121	.	DP=26;AF1=1;CI95=1,1;DP4=0,0,2,24;MQ=31;FQ=-105	GT:PL:GQ	1/1:154,78,0:99
19	8348048	.	A	G	222	.	DP=41;AF1=1;CI95=1,1;DP4=0,0,9,30;MQ=34;FQ=-144	GT:PL:GQ	1/1:255,117,0:99
19	8348080	.	C	T	167	.	DP=46;AF1=1;CI95=1,1;DP4=0,0,20,26;MQ=35;FQ=-165	GT:PL:GQ	1/1:200,138,0:99
19	8348129	.	G	A	222	.	DP=36;AF1=1;CI95=1,1;DP4=0,0,21,14;MQ=35;FQ=-132	GT:PL:GQ	1/1:255,105,0:99
19	8348158	.	C	A	138	.	DP=18;AF1=1;CI95=1,1;DP4=0,0,12,3;MQ=32;FQ=-72	GT:PL:GQ	1/1:171,45,0:87
19	8348160	.	T	A	179	.	DP=15;AF1=1;CI95=1,1;DP4=0,0,11,3;MQ=32;FQ=-69	GT:PL:GQ	1/1:212,42,0:81
19	8348441	.	T	A	62.3	.	DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=25;FQ=-42	GT:PL:GQ	1/1:95,15,0:27
19	8348471	.	C	T	222	.	DP=32;AF1=1;CI95=1,1;DP4=0,0,16,16;MQ=33;FQ=-123	GT:PL:GQ	1/1:255,96,0:99
19	8348485	.	G	A	102	.	DP=40;AF1=1;CI95=1,1;DP4=0,0,21,18;MQ=34;FQ=-144	GT:PL:GQ	1/1:135,117,0:99
19	8348498	.	G	A	217	.	DP=52;AF1=1;CI95=1,1;DP4=0,0,29,22;MQ=35;FQ=-181	GT:PL:GQ	1/1:250,154,0:99
19	8348514	.	T	C	212	.	DP=59;AF1=1;CI95=1,1;DP4=0,0,35,24;MQ=35;FQ=-205	GT:PL:GQ	1/1:245,178,0:99
19	8348590	.	A	G	172	.	DP=20;AF1=1;CI95=1,1;DP4=0,0,14,5;MQ=36;FQ=-84	GT:PL:GQ	1/1:205,57,0:99
19	8348635	.	T	C	146	.	DP=12;AF1=1;CI95=1,1;DP4=0,0,2,9;MQ=37;FQ=-60	GT:PL:GQ	1/1:179,33,0:63
19	8348642	.	T	C	222	.	DP=16;AF1=1;CI95=1,1;DP4=0,0,3,13;MQ=37;FQ=-75	GT:PL:GQ	1/1:255,48,0:93
19	8348695	.	T	TA	214	.	INDEL;DP=18;AF1=1;CI95=1,1;DP4=0,0,4,13;MQ=37;FQ=-85.5	GT:PL:GQ	1/1:255,51,0:99
19	8348701	.	C	T	155	.	DP=18;AF1=1;CI95=1,1;DP4=0,0,4,14;MQ=37;FQ=-81	GT:PL:GQ	1/1:188,54,0:99
19	8348922	.	T	C	222	.	DP=13;AF1=1;CI95=1,1;DP4=0,0,7,5;MQ=37;FQ=-63	GT:PL:GQ	1/1:255,36,0:69
19	8348969	.	T	C	161	.	DP=15;AF1=1;CI95=1,1;DP4=0,0,8,7;MQ=37;FQ=-72	GT:PL:GQ	1/1:194,45,0:87
19	8349035	.	G	A	50.1	.	DP=7;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=33;FQ=-45	GT:PL:GQ	1/1:83,18,0:33
19	8349037	.	G	A	56.1	.	DP=7;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=33;FQ=-45	GT:PL:GQ	1/1:89,18,0:33
19	8349080	.	A	G	33.3	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=33;FQ=-42	GT:PL:GQ	1/1:66,15,0:27
19	8349101	.	C	G	83.3	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=33;FQ=-42	GT:PL:GQ	1/1:116,15,0:27
19	8549054	.	T	G	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	8553877	.	G	C	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	8555072	.	A	C	4.13	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:32,3,0:3
19	8741092	.	G	T	5.46	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:34,3,0:3
19	8783635	.	C	CA	147	.	INDEL;DP=23;AF1=0.5;CI95=0.5,0.5;DP4=2,6,10,2;MQ=36;FQ=126;PV4=0.019,1,0.12,0.01	GT:PL:GQ	0/1:185,0,161:99
19	8783903	.	G	GTC	21.3	.	INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:60,6,0:10
19	8812489	.	GT	G	34.5	.	INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,2,1;MQ=35;FQ=18.5;PV4=0.4,0.047,0.25,0.0021	GT:PL:GQ	0/1:72,0,53:56
19	8817010	.	C	T	3.01	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=37;FQ=3.01;PV4=1,1,1,1	GT:PL:GQ	0/1:30,0,30:28
19	8838292	.	G	A	23	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=37;FQ=-36	GT:PL:GQ	1/1:55,9,0:15
19	8838395	.	C	A	3.55	.	DP=2;AF1=0.5014;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=-6.58;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,22:26
19	8841856	.	G	GCA	36.5	.	INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,4;MQ=36;FQ=38.3;PV4=0.14,0.19,0.22,0.058	GT:PL:GQ	0/1:74,0,79:76
19	8850152	.	G	C	5.46	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:34,3,0:3
19	8895305	.	T	A	7.8	.	DP=20;AF1=0.5;CI95=0.5,0.5;DP4=3,5,3,1;MQ=37;FQ=10.4;PV4=0.55,0.0027,1,1.9e-09	GT:PL:GQ	0/1:37,0,157:39
19	8899002	.	T	G	16.1	.	DP=39;AF1=0.5;CI95=0.5,0.5;DP4=2,3,7,0;MQ=36;FQ=19.1;PV4=0.045,0.00068,1,1	GT:PL:GQ	0/1:46,0,85:49
19	8900459	.	C	G	7.8	.	DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,3;MQ=37;FQ=10.4;PV4=0.4,0.0097,1,0.0075	GT:PL:GQ	0/1:37,0,59:39
19	8900460	.	AG	AGG	24.5	.	INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,1;MQ=37;FQ=21.3;PV4=1,1,1,0.012	GT:PL:GQ	0/1:62,0,57:59
19	8900589	.	AGG	AG	16.6	.	INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=37;FQ=17.4;PV4=1,0.31,1,0.03	GT:PL:GQ	0/1:54,0,56:55
19	8901128	.	T	TG	15.6	.	INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=37;FQ=6.39;PV4=1,0.37,1,0.00012	GT:PL:GQ	0/1:53,0,40:43
19	8904439	.	TGG	TG	75.5	.	INDEL;DP=15;AF1=0.5;CI95=0.5,0.5;DP4=2,1,3,3;MQ=35;FQ=43.5;PV4=1,0.004,0.16,0.034	GT:PL:GQ	0/1:113,0,78:81
19	8904440	.	G	GT	66.5	.	INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=2,1,4,2;MQ=35;FQ=43.5;PV4=1,0.044,0.16,0.036	GT:PL:GQ	0/1:104,0,78:81
19	8905828	.	T	A	4.77	.	DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,3,0;MQ=37;FQ=6.95;PV4=1,0.007,1,0.11	GT:PL:GQ	0/1:33,0,53:33
19	8920813	.	CGG	CG	10.8	.	INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=37;FQ=13.1;PV4=1,0.0022,1,0.012	GT:PL:GQ	0/1:48,0,56:50
19	8927995	.	C	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	8948001	.	C	G	23	.	DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,2;MQ=37;FQ=22.5;PV4=1,0.0043,1,0.27	GT:PL:GQ	0/1:53,0,52:52
19	8966507	.	A	G	5.46	.	DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=1,3,2,0;MQ=37;FQ=7.8;PV4=0.4,0.16,1,0.22	GT:PL:GQ	0/1:34,0,99:34
19	8977007	.	GA	G	22.2	.	INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:61,6,0:10
19	8977011	.	G	A	79.1	.	DP=10;AF1=1;CI95=1,1;DP4=0,0,2,5;MQ=37;FQ=-48	GT:PL:GQ	1/1:112,21,0:39
19	8979553	.	G	GC	41.5	.	INDEL;DP=4;AF1=0.501;CI95=0.5,0.5;DP4=0,1,3,0;MQ=37;FQ=-10.9;PV4=0.25,1,1,1	GT:PL:GQ	0/1:79,0,24:27
19	8981699	.	C	CA	22.2	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:61,6,0:10
19	8989644	.	A	C	3.41	.	DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-33	GT:PL:GQ	1/1:32,6,0:4
19	8989891	.	C	T	8.65	.	DP=5;AF1=0.5005;CI95=0.5,0.5;DP4=0,1,1,1;MQ=37;FQ=-3.17;PV4=1,0.18,1,0.16	GT:PL:GQ	0/1:38,0,27:31
19	8990112	.	C	A	7.59	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:38,6,0:7
19	8999131	.	A	G	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	9010575	.	T	G	3.56	.	DP=2;AF1=0.503;CI95=0.5,0.5;DP4=1,0,1,0;MQ=32;FQ=-8.86;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,19:25
19	9010791	.	C	A	7.8	.	DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,3;MQ=37;FQ=10.4;PV4=1,0.0042,1,0.093	GT:PL:GQ	0/1:37,0,84:39
19	9020243	.	TA	T	18.5	.	INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,4,1,2;MQ=36;FQ=21.5;PV4=0.43,0.00079,0.14,0.18	GT:PL:GQ	0/1:56,0,93:59
19	9066341	.	G	T	3.01	.	DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=37;FQ=3.25;PV4=1,1,1,1	GT:PL:GQ	0/1:30,0,31:28
19	9096827	.	A	G	6.98	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:36,3,0:4
19	9097851	.	C	A	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	9100285	.	G	T	3.59	.	DP=2;AF1=0.51;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=-13.3;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,14:21
19	9126825	.	A	T	6.98	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:36,3,0:4
19	9148172	.	T	C	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
19	9216844	.	T	A	4.13	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:32,3,0:3
19	9358012	.	G	A	164	.	DP=11;AF1=1;CI95=1,1;DP4=0,0,10,1;MQ=37;FQ=-60	GT:PL:GQ	1/1:197,33,0:63
19	9358045	.	C	A	191	.	DP=22;AF1=1;CI95=1,1;DP4=0,0,15,6;MQ=37;FQ=-90	GT:PL:GQ	1/1:224,63,0:99
19	9358292	.	A	G	167	.	DP=58;AF1=1;CI95=1,1;DP4=0,0,27,24;MQ=37;FQ=-181	GT:PL:GQ	1/1:200,154,0:99
19	9358454	.	G	A	222	.	DP=78;AF1=1;CI95=1,1;DP4=0,0,42,36;MQ=37;FQ=-262	GT:PL:GQ	1/1:255,235,0:99
19	9358486	.	T	G	158	.	DP=62;AF1=1;CI95=1,1;DP4=0,0,25,32;MQ=37;FQ=-199	GT:PL:GQ	1/1:191,172,0:99
19	9358567	.	A	G	222	.	DP=50;AF1=1;CI95=1,1;DP4=0,0,11,39;MQ=37;FQ=-178	GT:PL:GQ	1/1:255,151,0:99
19	9632540	.	A	G	222	.	DP=19;AF1=1;CI95=1,1;DP4=0,0,11,7;MQ=37;FQ=-81	GT:PL:GQ	1/1:255,54,0:99
19	9632576	.	A	G	222	.	DP=27;AF1=1;CI95=1,1;DP4=0,0,16,10;MQ=37;FQ=-105	GT:PL:GQ	1/1:255,78,0:99
19	9632798	.	A	G	140	.	DP=29;AF1=1;CI95=1,1;DP4=0,0,14,14;MQ=37;FQ=-111	GT:PL:GQ	1/1:173,84,0:99
19	9633610	.	T	C	30.8	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=32;FQ=-33	GT:PL:GQ	1/1:62,6,0:10
19	9633663	.	T	G	40	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=30;FQ=-36	GT:PL:GQ	1/1:72,9,0:16
19	9633666	.	A	G	39	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=30;FQ=-36	GT:PL:GQ	1/1:71,9,0:16
19	9681721	.	G	A	148	.	DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,0,5,3;MQ=35;FQ=36;PV4=0.49,0.19,0.19,1	GT:PL:GQ	0/1:178,0,63:66
19	9681741	.	A	T	81	.	DP=8;AF1=1;CI95=1,1;DP4=0,0,6,2;MQ=34;FQ=-51	GT:PL:GQ	1/1:114,24,0:45
19	9681750	.	T	A	61.1	.	DP=7;AF1=1;CI95=1,1;DP4=0,0,6,1;MQ=34;FQ=-48	GT:PL:GQ	1/1:94,21,0:39
19	9681756	.	G	A	45.3	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=33;FQ=-42	GT:PL:GQ	1/1:78,15,0:27
19	9681764	.	A	T	39.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=32;FQ=-39	GT:PL:GQ	1/1:72,12,0:21
19	9684345	.	A	G	6.98	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:36,3,0:4
19	9952338	.	C	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	10057473	.	G	GTC	75.5	.	INDEL;DP=29;AF1=0.5;CI95=0.5,0.5;DP4=1,4,10,0;MQ=33;FQ=73;PV4=0.0037,0.17,0.012,1	GT:PL:GQ	0/1:113,0,109:99
19	10059270	.	G	C	21	.	DP=35;AF1=0.5;CI95=0.5,0.5;DP4=4,11,0,9;MQ=36;FQ=24;PV4=0.26,3e-14,0.0078,3.5e-05	GT:PL:GQ	0/1:51,0,255:54
19	10060151	.	CAAA	CAA	27.2	.	INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:66,6,0:10
19	10126690	.	A	AC	14.6	.	INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,2,2,0;MQ=37;FQ=16.1;PV4=0.33,1,1,0.0011	GT:PL:GQ	0/1:52,0,56:53
19	10130185	.	GT	G	33.4	.	INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=30;FQ=-43.5	GT:PL:GQ	1/1:73,9,0:16
19	10133086	.	A	G	170	.	DP=27;AF1=0.5;CI95=0.5,0.5;DP4=10,6,7,4;MQ=37;FQ=173;PV4=1,0.5,1,1	GT:PL:GQ	0/1:200,0,255:99
19	10153682	.	A	C	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
19	10157183	.	G	T	35	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=37;FQ=-36	GT:PL:GQ	1/1:67,9,0:16
19	10163595	.	A	AG	27.2	.	INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:66,6,0:10
19	10250372	.	G	A	32	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=33;FQ=-36	GT:PL:GQ	1/1:64,9,0:16
19	10250380	.	A	G	72.3	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=35;FQ=-42	GT:PL:GQ	1/1:105,15,0:27
19	10250405	.	A	G	159	.	DP=9;AF1=1;CI95=1,1;DP4=0,0,4,4;MQ=32;FQ=-51	GT:PL:GQ	1/1:192,24,0:45
19	10250417	.	T	C	222	.	DP=13;AF1=1;CI95=1,1;DP4=0,0,9,4;MQ=33;FQ=-66	GT:PL:GQ	1/1:255,39,0:75
19	10250483	.	A	T	110	.	DP=8;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=32;FQ=-51	GT:PL:GQ	1/1:143,24,0:45
19	10250497	.	C	G	55	.	DP=8;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=32;FQ=-51	GT:PL:GQ	1/1:88,24,0:45
19	10250501	.	C	T	74	.	DP=8;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=32;FQ=-51	GT:PL:GQ	1/1:107,24,0:45
19	10262515	.	A	T	3.58	.	DP=2;AF1=0.5078;CI95=0.5,0.5;DP4=0,1,1,0;MQ=37;FQ=-12.4;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,15:21
19	10268290	.	T	TTC	56.5	.	INDEL;DP=5;AF1=0.5016;CI95=0.5,0.5;DP4=0,1,4,0;MQ=37;FQ=-12.8;PV4=0.2,0.49,1,0.13	GT:PL:GQ	0/1:94,0,22:25
19	10281024	.	G	T	7.8	.	DP=5;AF1=0.5007;CI95=0.5,0.5;DP4=0,1,3,0;MQ=37;FQ=-4.28;PV4=0.25,0.023,1,0.14	GT:PL:GQ	0/1:37,0,25:29
19	10297732	.	TGG	TGGGG	50.4	.	INDEL;DP=9;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=37;FQ=-43.5	GT:PL:GQ	1/1:90,9,0:16
19	10498385	.	A	T	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	10502388	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	10525511	.	A	C	13.2	.	DP=9;AF1=0.5;CI95=0.5,0.5;DP4=4,1,0,4;MQ=33;FQ=16.1;PV4=0.048,0.019,0.0056,1	GT:PL:GQ	0/1:43,0,107:46
19	10590412	.	G	C	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
19	10607212	.	A	G	4.13	.	DP=7;AF1=0.4998;CI95=0.5,0.5;DP4=1,2,2,0;MQ=37;FQ=6.2;PV4=0.4,0.00041,1,1	GT:PL:GQ	0/1:32,0,89:31
19	10656785	.	TA	TAAA	37.4	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=37;FQ=-43.5	GT:PL:GQ	1/1:77,9,0:16
19	10663128	.	A	G	121	.	DP=22;AF1=0.5;CI95=0.5,0.5;DP4=5,5,7,5;MQ=37;FQ=124;PV4=1,0.0086,1,1	GT:PL:GQ	0/1:151,0,173:99
19	10669900	.	TC	TCC	21.5	.	INDEL;DP=3;AF1=0.5013;CI95=0.5,0.5;DP4=0,1,2,0;MQ=37;FQ=-11.8;PV4=0.33,1,1,0.027	GT:PL:GQ	0/1:59,0,23:26
19	10681183	.	G	C	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	10689339	.	TA	TAAA	82.7	.	INDEL;DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=37;FQ=-49.5	GT:PL:GQ	1/1:123,15,0:27
19	10690081	.	GT	GTTT	23.2	.	INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:62,6,0:10
19	10698013	.	G	C	4.61	.	DP=8;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:34,6,0:5
19	10699336	.	AGG	AG	73.5	.	INDEL;DP=7;AF1=0.5016;CI95=0.5,0.5;DP4=1,0,2,2;MQ=37;FQ=-12.8;PV4=1,1,1,0.14	GT:PL:GQ	0/1:111,0,22:25
19	10700484	.	A	C	122	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,2;MQ=37;FQ=-45	GT:PL:GQ	1/1:155,18,0:33
19	10700486	.	G	GC	95	.	INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=37;FQ=-46.5	GT:PL:GQ	1/1:135,12,0:21
19	10701724	.	AGG	AG	19.5	.	INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,4,2,1;MQ=37;FQ=22.5;PV4=0.46,0.32,1,0.0032	GT:PL:GQ	0/1:57,0,130:60
19	10702354	.	T	TCTGG	73	.	INDEL;DP=10;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-46.5	GT:PL:GQ	1/1:113,12,0:21
19	10773851	.	G	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	10788446	.	T	C	13.2	.	DP=32;AF1=0.5;CI95=0.5,0.5;DP4=12,1,0,7;MQ=37;FQ=16.1;PV4=0.0001,0.00062,1,1	GT:PL:GQ	0/1:43,0,165:46
19	10924486	.	T	C	3.55	.	DP=2;AF1=0.5006;CI95=0.5,0.5;DP4=0,1,0,1;MQ=37;FQ=-4.74;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,25:28
19	10927766	.	G	GAT	11.8	.	INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,1,1;MQ=37;FQ=14.6;PV4=0.4,0.22,1,0.0014	GT:PL:GQ	0/1:49,0,79:51
19	10947182	.	G	C	41.8	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:73,6,0:10
19	10948976	.	TC	TCC	64.9	.	INDEL;DP=7;AF1=0.5554;CI95=0.5,1;DP4=1,0,3,2;MQ=35;FQ=-27.5;PV4=1,0.27,1,0.35	GT:PL:GQ	0/1:102,0,7:10
19	10972143	.	G	T	8.44	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:39,6,0:8
19	10975413	.	C	CA	12.5	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:51,6,0:9
19	11017779	.	TC	TCAC	16.3	.	INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=32;FQ=-40.5	GT:PL:GQ	1/1:55,6,0:10
19	11122585	.	T	TC	53.7	.	INDEL;DP=9;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=33;FQ=-49.5	GT:PL:GQ	1/1:94,15,0:27
19	11165572	.	A	G	222	.	DP=16;AF1=1;CI95=1,1;DP4=0,0,10,6;MQ=37;FQ=-75	GT:PL:GQ	1/1:255,48,0:93
19	11165677	.	G	A	49.1	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,3;MQ=37;FQ=-45	GT:PL:GQ	1/1:82,18,0:33
19	11165689	.	T	A	85.1	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,3;MQ=37;FQ=-45	GT:PL:GQ	1/1:118,18,0:33
19	11165712	.	A	G	57.3	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=37;FQ=-42	GT:PL:GQ	1/1:90,15,0:27
19	11196378	.	CTTT	CTTTT	214	.	INDEL;DP=34;AF1=1;CI95=1,1;DP4=0,0,18,15;MQ=37;FQ=-134	GT:PL:GQ	1/1:255,99,0:99
19	11196544	.	C	T	141	.	DP=19;AF1=1;CI95=1,1;DP4=0,0,7,11;MQ=37;FQ=-81	GT:PL:GQ	1/1:174,54,0:99
19	11196769	.	A	G	174	.	DP=23;AF1=1;CI95=1,1;DP4=0,0,6,15;MQ=37;FQ=-90	GT:PL:GQ	1/1:207,63,0:99
19	11402540	.	TC	T	32.4	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=37;FQ=-43.5	GT:PL:GQ	1/1:72,9,0:16
19	11465876	.	C	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	11467556	.	ATGTGTGTGTGTGTGT	ATGTGTGTGTGTGT	216	.	INDEL;DP=92;AF1=0.5;CI95=0.5,0.5;DP4=19,27,6,22;MQ=37;FQ=217;PV4=0.13,0.00092,0.36,1	GT:PL:GQ	0/1:254,0,255:99
19	11472871	.	G	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	11489280	.	A	T	13	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=32;FQ=-33	GT:PL:GQ	1/1:44,6,0:9
19	11537444	.	C	CG	48.5	.	INDEL;DP=6;AF1=0.5016;CI95=0.5,0.5;DP4=1,0,0,4;MQ=37;FQ=-12.8;PV4=0.2,0.18,1,1	GT:PL:GQ	0/1:86,0,22:25
19	11544046	.	G	GCT	74.5	.	INDEL;DP=28;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=35;FQ=-61.5	GT:PL:GQ	1/1:115,27,0:51
19	11546250	.	A	G	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	11583902	.	A	C	3.54	.	DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=-3.07;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,29:29
19	11593164	.	G	GCC	121	.	INDEL;DP=16;AF1=1;CI95=0.5,1;DP4=1,0,15,0;MQ=36;FQ=-45.5;PV4=1,1,0.36,0.34	GT:PL:GQ	1/1:161,11,0:19
19	11593167	.	A	G	32	.	DP=16;AF1=1;CI95=0.5,1;DP4=1,0,10,0;MQ=37;FQ=-30;PV4=1,0.0089,1,1	GT:PL:GQ	1/1:62,3,0:6
19	11632363	.	A	AGT	45.4	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=37;FQ=-43.5	GT:PL:GQ	1/1:85,9,0:16
19	11660704	.	GAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	GAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	8.83	.	INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:47,6,0:8
19	11661671	.	TC	TCC	29.2	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:68,6,0:10
19	11676455	.	CT	C	14.6	.	INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,1;MQ=37;FQ=14.1;PV4=1,0.25,1,0.23	GT:PL:GQ	0/1:52,0,51:51
19	11677634	.	A	G	15.1	.	DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=30;FQ=-36	GT:PL:GQ	1/1:47,9,0:14
19	11777860	.	A	G	49.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=25;FQ=-39	GT:PL:GQ	1/1:82,12,0:21
19	11777864	.	C	G	51.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=25;FQ=-39	GT:PL:GQ	1/1:84,12,0:21
19	11777878	.	C	G	58.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=25;FQ=-39	GT:PL:GQ	1/1:91,12,0:21
19	11777923	.	T	C	47.5	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=28;FQ=-39	GT:PL:GQ	1/1:80,12,0:21
19	11777948	.	C	G	43.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=28;FQ=-39	GT:PL:GQ	1/1:76,12,0:21
19	11839957	.	A	G	38.1	.	DP=10;AF1=0.5064;CI95=0.5,0.5;DP4=0,1,4,2;MQ=34;FQ=-11.3;PV4=0.43,0.0041,0.29,0.17	GT:PL:GQ	0/1:68,0,16:19
19	11839959	.	A	G	32.1	.	DP=11;AF1=0.508;CI95=0.5,0.5;DP4=0,1,4,2;MQ=34;FQ=-12.3;PV4=0.43,0.0011,0.29,0.17	GT:PL:GQ	0/1:62,0,15:18
19	11839992	.	A	G	106	.	DP=18;AF1=1;CI95=0.5,1;DP4=0,1,13,3;MQ=35;FQ=-41;PV4=0.24,3.8e-07,0.33,0.34	GT:PL:GQ	1/1:139,14,0:25
19	11840001	.	T	C	112	.	DP=20;AF1=1;CI95=1,1;DP4=0,1,15,3;MQ=35;FQ=-47;PV4=0.21,7.2e-06,0.34,0.37	GT:PL:GQ	1/1:145,20,0:37
19	11840069	.	T	C	86.1	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=37;FQ=-45	GT:PL:GQ	1/1:119,18,0:33
19	11840074	.	GATCATCA	GATCA	60.4	.	INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=37;FQ=-43.5	GT:PL:GQ	1/1:100,9,0:16
19	11840087	.	A	G	19.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:51,6,0:10
19	11840209	.	A	G	76.3	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=25;FQ=-42	GT:PL:GQ	1/1:109,15,0:27
19	11840219	.	C	G	66.3	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=25;FQ=-42	GT:PL:GQ	1/1:99,15,0:27
19	11840229	.	T	G	65.3	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=25;FQ=-42	GT:PL:GQ	1/1:98,15,0:27
19	11840237	.	A	T	42.3	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=25;FQ=-42	GT:PL:GQ	1/1:75,15,0:27
19	11840260	.	G	C	35.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=25;FQ=-39	GT:PL:GQ	1/1:68,12,0:21
19	11904739	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	11952270	.	A	G	222	.	DP=34;AF1=1;CI95=1,1;DP4=0,1,13,20;MQ=35;FQ=-92;PV4=1,0.16,0.29,1	GT:PL:GQ	1/1:255,65,0:99
19	11952283	.	T	C	165	.	DP=38;AF1=1;CI95=1,1;DP4=0,0,14,21;MQ=35;FQ=-132	GT:PL:GQ	1/1:198,105,0:99
19	11952293	.	A	G	222	.	DP=45;AF1=1;CI95=1,1;DP4=0,0,19,25;MQ=34;FQ=-159	GT:PL:GQ	1/1:255,132,0:99
19	11952355	.	G	C	21.3	.	DP=14;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=30;FQ=-42	GT:PL:GQ	1/1:54,15,0:26
19	11952357	.	T	C	39.1	.	DP=14;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=32;FQ=-45	GT:PL:GQ	1/1:72,18,0:33
19	11952381	.	C	T	82.1	.	DP=8;AF1=1;CI95=1,1;DP4=0,0,5,2;MQ=36;FQ=-48	GT:PL:GQ	1/1:115,21,0:39
19	11952422	.	CTC	CTCGTC	88.7	.	INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=37;FQ=-49.5	GT:PL:GQ	1/1:129,15,0:27
19	11952453	.	T	C	88.3	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=37;FQ=-42	GT:PL:GQ	1/1:121,15,0:27
19	11952566	.	C	G	112	.	DP=9;AF1=1;CI95=1,1;DP4=0,0,5,4;MQ=37;FQ=-54	GT:PL:GQ	1/1:145,27,0:51
19	11952602	.	C	T	186	.	DP=21;AF1=1;CI95=1,1;DP4=0,0,12,9;MQ=37;FQ=-90	GT:PL:GQ	1/1:219,63,0:99
19	11952628	.	CTCTTCT	CTCT	15.6	.	INDEL;DP=28;AF1=0.5;CI95=0.5,0.5;DP4=10,13,3,1;MQ=37;FQ=18.5;PV4=0.33,1,1,1	GT:PL:GQ	0/1:53,0,255:56
19	11952659	.	A	C	172	.	DP=21;AF1=1;CI95=1,1;DP4=0,0,9,12;MQ=37;FQ=-90	GT:PL:GQ	1/1:205,63,0:99
19	11952675	.	T	C	178	.	DP=17;AF1=1;CI95=1,1;DP4=0,0,8,8;MQ=37;FQ=-75	GT:PL:GQ	1/1:211,48,0:93
19	11952711	.	TA	T	31.5	.	INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,4,1,2;MQ=37;FQ=34.4;PV4=0.43,1,1,0.0096	GT:PL:GQ	0/1:69,0,86:72
19	11952712	.	AGCTGCTGCTGCTGC	AGCTGCTGCTGCTGCTGC	99.6	.	INDEL;DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=37;FQ=-52.5	GT:PL:GQ	1/1:140,18,0:33
19	11952805	.	A	G	198	.	DP=21;AF1=1;CI95=1,1;DP4=0,0,8,12;MQ=37;FQ=-87	GT:PL:GQ	1/1:231,60,0:99
19	11952841	.	T	G	191	.	DP=24;AF1=1;CI95=1,1;DP4=0,0,16,7;MQ=36;FQ=-96	GT:PL:GQ	1/1:224,69,0:99
19	11952882	.	A	C	140	.	DP=28;AF1=1;CI95=1,1;DP4=0,0,22,6;MQ=34;FQ=-111	GT:PL:GQ	1/1:173,84,0:99
19	11952895	.	A	G	104	.	DP=25;AF1=1;CI95=1,1;DP4=0,0,21,1;MQ=34;FQ=-93	GT:PL:GQ	1/1:137,66,0:99
19	11997967	.	G	C	6.98	.	DP=3;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,2,0;MQ=33;FQ=3.2;PV4=1,0.019,0.33,1	GT:PL:GQ	0/1:36,0,28:31
19	12033202	.	G	A	27	.	DP=4;AF1=0.5008;CI95=0.5,0.5;DP4=0,1,1,2;MQ=28;FQ=-4.12;PV4=1,0.048,0,0.22	GT:PL:GQ	0/1:57,0,25:28
19	12033225	.	T	G	178	.	DP=15;AF1=1;CI95=0.5,1;DP4=0,1,5,7;MQ=34;FQ=-29;PV4=1,0.23,0.26,0.1	GT:PL:GQ	1/1:207,2,0:5
19	12033238	.	T	C	222	.	DP=23;AF1=1;CI95=1,1;DP4=0,1,10,9;MQ=35;FQ=-50;PV4=1,0.39,0.32,0.24	GT:PL:GQ	1/1:255,23,0:43
19	12033263	.	A	G	222	.	DP=32;AF1=1;CI95=1,1;DP4=0,0,15,15;MQ=36;FQ=-117	GT:PL:GQ	1/1:255,90,0:99
19	12033304	.	A	G	222	.	DP=41;AF1=1;CI95=1,1;DP4=0,0,18,23;MQ=36;FQ=-150	GT:PL:GQ	1/1:255,123,0:99
19	12033367	.	A	C	152	.	DP=32;AF1=1;CI95=1,1;DP4=0,0,11,19;MQ=37;FQ=-117	GT:PL:GQ	1/1:185,90,0:99
19	12033372	.	TC	TCC	214	.	INDEL;DP=30;AF1=1;CI95=1,1;DP4=0,0,11,18;MQ=37;FQ=-122	GT:PL:GQ	1/1:255,87,0:99
19	12033396	.	T	C	192	.	DP=21;AF1=1;CI95=1,1;DP4=0,0,9,11;MQ=37;FQ=-87	GT:PL:GQ	1/1:225,60,0:99
19	12033437	.	A	G	181	.	DP=8;AF1=1;CI95=1,1;DP4=0,0,4,4;MQ=37;FQ=-51	GT:PL:GQ	1/1:214,24,0:45
19	12052486	.	T	C	3.55	.	DP=2;AF1=0.5011;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=-5.91;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,23:27
19	12063068	.	G	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	12075788	.	A	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	12596319	.	G	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	12761248	.	C	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	12761275	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	12845038	.	AT	ATT	11.5	.	INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:50,6,0:9
19	12873388	.	C	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	12979639	.	A	T	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
19	12979730	.	T	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	12979796	.	G	A	25.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=32;FQ=-33	GT:PL:GQ	1/1:57,6,0:10
19	12980273	.	G	A	29	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=37;FQ=-36	GT:PL:GQ	1/1:61,9,0:16
19	12980707	.	A	G	86	.	DP=10;AF1=1;CI95=1,1;DP4=0,0,3,6;MQ=37;FQ=-54	GT:PL:GQ	1/1:119,27,0:51
19	12980733	.	G	A	124	.	DP=13;AF1=1;CI95=1,1;DP4=0,0,4,9;MQ=37;FQ=-66	GT:PL:GQ	1/1:157,39,0:75
19	12980760	.	C	G	222	.	DP=15;AF1=1;CI95=1,1;DP4=0,0,3,12;MQ=37;FQ=-72	GT:PL:GQ	1/1:255,45,0:87
19	12980967	.	G	A	104	.	DP=10;AF1=1;CI95=1,1;DP4=0,0,3,6;MQ=37;FQ=-54	GT:PL:GQ	1/1:137,27,0:51
19	12981016	.	T	C	222	.	DP=15;AF1=1;CI95=1,1;DP4=0,0,9,6;MQ=37;FQ=-72	GT:PL:GQ	1/1:255,45,0:87
19	13670070	.	C	T	13.9	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=25;FQ=-33	GT:PL:GQ	1/1:45,6,0:10
19	13670140	.	C	T	28	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=25;FQ=-36	GT:PL:GQ	1/1:60,9,0:16
19	13670153	.	A	G	30	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=25;FQ=-36	GT:PL:GQ	1/1:62,9,0:16
19	13670161	.	G	A	27	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=25;FQ=-36	GT:PL:GQ	1/1:59,9,0:16
19	14007582	.	C	A	3.98	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33	GT:PL:GQ	1/1:33,6,0:5
19	14007612	.	AAGAGAG	AAGAG	28.2	.	INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:67,6,0:10
19	14070075	.	T	A	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	14524333	.	TAG	T	14.6	.	INDEL;DP=4;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,1,1;MQ=37;FQ=-7.41;PV4=1,1,1,0.39	GT:PL:GQ	0/1:52,0,28:31
19	14527043	.	T	A	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	14580308	.	T	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	14592466	.	GC	GCCC	22.2	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:61,6,0:10
19	14607703	.	T	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	15533970	.	T	C	51	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=30;FQ=-36	GT:PL:GQ	1/1:83,9,0:16
19	15533994	.	A	G	45.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=32;FQ=-39	GT:PL:GQ	1/1:78,12,0:21
19	15534018	.	A	G	42.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=32;FQ=-39	GT:PL:GQ	1/1:75,12,0:21
19	15647552	.	C	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	16143433	.	T	G	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
19	16143436	.	A	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	16213914	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	16296200	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	16298173	.	C	A	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	16304596	.	G	C	3.54	.	DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=3.25;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,30:29
19	16471631	.	T	C	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	16548752	.	G	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	16631177	.	C	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	16735479	.	G	T	6.98	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:36,3,0:4
19	16737011	.	C	G	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	16751327	.	G	A	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	16800107	.	T	C	3.54	.	DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	17419010	.	C	T	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	17752449	.	T	C	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
19	17767368	.	C	T	152	.	DP=13;AF1=1;CI95=1,1;DP4=0,0,6,7;MQ=36;FQ=-66	GT:PL:GQ	1/1:185,39,0:75
19	17767372	.	G	A	161	.	DP=13;AF1=1;CI95=1,1;DP4=0,0,6,7;MQ=36;FQ=-66	GT:PL:GQ	1/1:194,39,0:75
19	18001132	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	18001229	.	G	C	13.9	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-33	GT:PL:GQ	1/1:45,6,0:10
19	18001743	.	A	G	3.02	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:30,3,0:4
19	18001767	.	T	C	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
19	18195972	.	C	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	18484588	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	18664889	.	A	ATG	27.5	.	INDEL;DP=11;AF1=0.5016;CI95=0.5,0.5;DP4=0,1,0,4;MQ=35;FQ=-12.8;PV4=1,0.18,0.34,0.42	GT:PL:GQ	0/1:65,0,22:25
19	18671826	.	T	C	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
19	18703713	.	T	G	4.13	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:32,3,0:3
19	20260046	.	C	A	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	20449580	.	A	T	4.13	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:32,3,0:3
19	20452978	.	GCC	GCCC	102	.	INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,5;MQ=37;FQ=32.5;PV4=0.23,1,1,2.4e-05	GT:PL:GQ	0/1:140,0,67:70
19	20454525	.	C	G	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	20697944	.	G	GC	106	.	INDEL;DP=13;AF1=0.6243;CI95=0.5,1;DP4=0,1,9,1;MQ=36;FQ=-30.5;PV4=0.18,0.19,0.38,0.11	GT:PL:GQ	0/1:143,0,4:7
19	20699318	.	A	T	34.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=34;FQ=-39	GT:PL:GQ	1/1:67,12,0:21
19	20705340	.	G	GATT	28.5	.	INDEL;DP=5;AF1=0.5008;CI95=0.5,0.5;DP4=1,0,3,0;MQ=34;FQ=-9.98;PV4=1,0.13,0.33,0.0037	GT:PL:GQ	0/1:66,0,25:28
19	20705889	.	A	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	20711314	.	TGG	TGGGG	17.5	.	INDEL;DP=10;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=33;FQ=-43.5	GT:PL:GQ	1/1:57,9,0:15
19	20711316	.	G	GGT	89.6	.	INDEL;DP=8;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=35;FQ=-52.5	GT:PL:GQ	1/1:130,18,0:33
19	20711320	.	G	C	32.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=37;FQ=-39	GT:PL:GQ	1/1:65,12,0:21
19	20715519	.	G	A	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
19	20717383	.	G	GAACT	25.5	.	INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,4,0,3;MQ=36;FQ=28.5;PV4=1,0.48,0.11,0.0065	GT:PL:GQ	0/1:63,0,130:66
19	21354909	.	G	A	12.2	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=33;FQ=-36	GT:PL:GQ	1/1:44,9,0:14
19	21467193	.	ACCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC	ACCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC	63	.	INDEL;DP=52;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=37;FQ=-46.5	GT:PL:GQ	1/1:103,12,0:21
19	21470903	.	T	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	21470906	.	T	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	21486985	.	T	C	28	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=37;FQ=-36	GT:PL:GQ	1/1:60,9,0:16
19	21486986	.	A	AG	65.4	.	INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=37;FQ=-43.5	GT:PL:GQ	1/1:105,9,0:16
19	21736204	.	C	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	21744637	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	21764018	.	T	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	21789476	.	G	T	12	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:43,6,0:9
19	21798928	.	C	A	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	21897216	.	A	G	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
19	21917388	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	21919108	.	AGG	AGGG	14.8	.	INDEL;DP=6;AF1=0.5263;CI95=0.5,1;DP4=1,0,1,1;MQ=37;FQ=-24.5;PV4=1,1,1,0	GT:PL:GQ	0/1:52,0,10:13
19	21936202	.	A	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	22011899	.	A	G	96.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=37;FQ=-39	GT:PL:GQ	1/1:129,12,0:21
19	22011902	.	A	C	48.5	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=37;FQ=-39	GT:PL:GQ	1/1:81,12,0:21
19	22011911	.	A	T	67.3	.	DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,1;MQ=37;FQ=-42	GT:PL:GQ	1/1:100,15,0:27
19	22011974	.	G	A	222	.	DP=37;AF1=1;CI95=1,1;DP4=0,0,17,18;MQ=37;FQ=-132	GT:PL:GQ	1/1:255,105,0:99
19	22012019	.	T	C	201	.	DP=44;AF1=1;CI95=1,1;DP4=0,0,23,21;MQ=37;FQ=-159	GT:PL:GQ	1/1:234,132,0:99
19	22012051	.	A	G	165	.	DP=35;AF1=1;CI95=1,1;DP4=0,0,15,19;MQ=37;FQ=-129	GT:PL:GQ	1/1:198,102,0:99
19	22012155	.	T	A	193	.	DP=24;AF1=1;CI95=1,1;DP4=0,0,16,8;MQ=36;FQ=-99	GT:PL:GQ	1/1:226,72,0:99
19	22012157	.	C	G	158	.	DP=24;AF1=1;CI95=1,1;DP4=0,0,16,7;MQ=36;FQ=-96	GT:PL:GQ	1/1:191,69,0:99
19	22012166	.	G	C	146	.	DP=11;AF1=1;CI95=1,1;DP4=0,0,6,5;MQ=35;FQ=-60	GT:PL:GQ	1/1:179,33,0:63
19	22012217	.	T	C	222	.	DP=17;AF1=1;CI95=1,1;DP4=0,0,7,8;MQ=36;FQ=-72	GT:PL:GQ	1/1:255,45,0:87
19	22012250	.	A	G	179	.	DP=25;AF1=1;CI95=1,1;DP4=0,0,8,16;MQ=36;FQ=-99	GT:PL:GQ	1/1:212,72,0:99
19	22012307	.	T	C	222	.	DP=22;AF1=1;CI95=1,1;DP4=0,0,6,16;MQ=36;FQ=-93	GT:PL:GQ	1/1:255,66,0:99
19	22012325	.	A	C	217	.	DP=12;AF1=1;CI95=1,1;DP4=0,0,4,7;MQ=36;FQ=-60	GT:PL:GQ	1/1:250,33,0:63
19	22012430	.	T	C	222	.	DP=24;AF1=1;CI95=1,1;DP4=0,0,6,17;MQ=37;FQ=-96	GT:PL:GQ	1/1:255,69,0:99
19	22012579	.	T	A	222	.	DP=42;AF1=1;CI95=1,1;DP4=0,0,26,15;MQ=37;FQ=-150	GT:PL:GQ	1/1:255,123,0:99
19	22012727	.	C	T	222	.	DP=21;AF1=1;CI95=1,1;DP4=0,0,8,13;MQ=37;FQ=-90	GT:PL:GQ	1/1:255,63,0:99
19	22012748	.	A	G	30.5	.	DP=18;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=37;FQ=-39	GT:PL:GQ	1/1:63,12,0:21
19	22012751	.	T	C	24	.	DP=17;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=37;FQ=-36	GT:PL:GQ	1/1:56,9,0:15
19	22012760	.	C	T	222	.	DP=16;AF1=1;CI95=1,1;DP4=0,0,5,10;MQ=36;FQ=-72	GT:PL:GQ	1/1:255,45,0:87
19	22128042	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	22376925	.	G	A	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	22516053	.	A	G	54	.	DP=9;AF1=1;CI95=1,1;DP4=0,0,3,5;MQ=36;FQ=-51	GT:PL:GQ	1/1:87,24,0:45
19	23130188	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	23216070	.	T	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	23216752	.	T	G	6.02	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=32;FQ=-33	GT:PL:GQ	1/1:36,6,0:6
19	23216754	.	G	A	13	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=32;FQ=-33	GT:PL:GQ	1/1:44,6,0:9
19	23225184	.	C	T	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	23239936	.	C	A	5.46	.	DP=19;AF1=0.4999;CI95=0.5,0.5;DP4=5,1,0,6;MQ=35;FQ=7.8;PV4=0.015,0.00042,0.072,1	GT:PL:GQ	0/1:34,0,116:34
19	23281456	.	A	G	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	23309145	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	23309152	.	T	C	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	23383229	.	C	G	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	23399342	.	T	C	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
19	23418245	.	G	T	40	.	DP=5;AF1=0.5016;CI95=0.5,0.5;DP4=1,0,1,3;MQ=37;FQ=-6.18;PV4=0.4,0.014,1,0.043	GT:PL:GQ	0/1:70,0,22:25
19	23418278	.	T	A	88.1	.	DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,3;MQ=37;FQ=-45	GT:PL:GQ	1/1:121,18,0:33
19	23418327	.	A	G	43.1	.	DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,4;MQ=37;FQ=-45	GT:PL:GQ	1/1:76,18,0:33
19	23418353	.	G	C	68	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=37;FQ=-36	GT:PL:GQ	1/1:100,9,0:16
19	23418485	.	T	C	50.1	.	DP=7;AF1=1;CI95=1,1;DP4=0,0,5,2;MQ=36;FQ=-48	GT:PL:GQ	1/1:83,21,0:39
19	23418549	.	G	A	17.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:49,6,0:10
19	23418558	.	G	A	12	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:43,6,0:9
19	23476446	.	G	A	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
19	23750472	.	TGCAG	TG	112	.	INDEL;DP=41;AF1=0.5;CI95=0.5,0.5;DP4=17,13,4,5;MQ=37;FQ=115;PV4=0.71,0.16,1,1	GT:PL:GQ	0/1:150,0,255:99
19	23750625	.	A	G	139	.	DP=52;AF1=1;CI95=1,1;DP4=0,0,29,22;MQ=37;FQ=-181	GT:PL:GQ	1/1:172,154,0:99
19	23800889	.	TA	T	7.35	.	INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=5,3,1,1;MQ=37;FQ=9.94;PV4=1,0.075,1,1	GT:PL:GQ	0/1:44,0,193:45
19	24001511	.	A	C	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	24021577	.	A	G	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	24054562	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	24069383	.	T	A	27.8	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:59,6,0:10
19	24125925	.	C	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	24191462	.	G	A	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	24196752	.	C	G	8.44	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=32;FQ=-33	GT:PL:GQ	1/1:39,6,0:8
19	24199057	.	C	T	6.02	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=25;FQ=-33	GT:PL:GQ	1/1:36,6,0:6
19	24199212	.	CT	CTT	18.5	.	INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,1;MQ=37;FQ=18.5;PV4=1,1,1,0.027	GT:PL:GQ	0/1:56,0,56:56
19	24205962	.	ACC	AC	14.4	.	INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:53,6,0:10
19	24209339	.	CT	CTT	11.5	.	INDEL;DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=32;FQ=-40.5	GT:PL:GQ	1/1:50,6,0:9
19	24276126	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	24297919	.	C	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	24409006	.	G	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	24434846	.	C	G	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
19	24439851	.	C	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	25085208	.	C	T	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
19	25088621	.	A	C	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
19	25152568	.	AG	A	13.4	.	INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:52,6,0:9
19	25176862	.	C	T	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	25202314	.	G	T	3.57	.	DP=2;AF1=0.5048;CI95=0.5,0.5;DP4=0,1,1,0;MQ=37;FQ=-10.6;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,17:23
19	25264826	.	T	A	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
19	25568427	.	A	G	28	.	DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=25;FQ=-36	GT:PL:GQ	1/1:60,9,0:16
19	25568441	.	G	A	89	.	DP=10;AF1=1;CI95=1,1;DP4=0,0,7,3;MQ=29;FQ=-57	GT:PL:GQ	1/1:122,30,0:57
19	25568480	.	A	G	169	.	DP=11;AF1=1;CI95=1,1;DP4=0,0,8,3;MQ=30;FQ=-60	GT:PL:GQ	1/1:202,33,0:63
19	25568513	.	T	A	124	.	DP=9;AF1=1;CI95=1,1;DP4=0,0,6,3;MQ=28;FQ=-54	GT:PL:GQ	1/1:157,27,0:51
19	25568527	.	A	G	109	.	DP=9;AF1=1;CI95=1,1;DP4=0,0,6,3;MQ=28;FQ=-54	GT:PL:GQ	1/1:142,27,0:51
19	25568536	.	A	G	13.2	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=25;FQ=-36	GT:PL:GQ	1/1:45,9,0:14
19	25581569	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	26697796	.	T	A	6.2	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:35,3,0:4
19	26728829	.	AGG	ATGG,AG	8.83	.	INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=33;FQ=-40.5	GT:PL:GQ	1/1:71,30,24,46,0,43:8
19	26747187	.	AGG	AG	14.4	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:53,6,0:10
19	26751288	.	G	GAC	116	.	INDEL;DP=8;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=35;FQ=-52.5	GT:PL:GQ	1/1:156,18,0:33
19	26756358	.	CA	CAAA	11.8	.	INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,1;MQ=37;FQ=14.4;PV4=1,0.41,1,0.0024	GT:PL:GQ	0/1:49,0,62:51
19	26758413	.	GT	GTT	52.4	.	INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=37;FQ=-43.5	GT:PL:GQ	1/1:92,9,0:16
19	26764380	.	C	T	13	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-33	GT:PL:GQ	1/1:44,6,0:9
19	26765941	.	AGG	AGGGG	24.2	.	INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37;FQ=-40.5	GT:PL:GQ	1/1:63,6,0:10
19	26780556	.	A	AC	18.3	.	INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=32;FQ=-40.5	GT:PL:GQ	1/1:57,6,0:10
19	26787476	.	G	A	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	26803166	.	A	G	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	26803281	.	G	T	7.8	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	1/1:37,3,0:4
19	26827257	.	G	A	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	26847473	.	A	C	10.2	.	DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37;FQ=-33	GT:PL:GQ	1/1:41,6,0:8
19	26852064	.	TACACACACACACACACACACACACACACACACACACACA	TACACACACACACACACACACACACACACACACACACA	118	.	INDEL;DP=55;AF1=0.5;CI95=0.5,0.5;DP4=8,10,4,6;MQ=37;FQ=121;PV4=1,1,1,1	GT:PL:GQ	0/1:156,0,255:99
19	27313337	.	G	A	3.41	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=37;FQ=-33	GT:PL:GQ	1/1:32,6,0:4
19	27314462	.	T	C	40	.	DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=37;FQ=-36	GT:PL:GQ	1/1:72,9,0:16
19	27466173	.	C	G	3.54	.	DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=37;FQ=3.54;PV4=1,1,1,1	GT:PL:GQ	0/1:31,0,31:29
19	28220602	.	T	G	222	.	DP=21;AF1=1;CI95=1,1;DP4=0,0,8,13;MQ=37;FQ=-90	GT:PL:GQ	1/1:255,63,0:99
19	28220622	.	C	T	222	.	DP=21;AF1=1;CI95=1,1;DP4=0,0,8,13;MQ=37;FQ=-90	GT:PL:GQ	1/1:255,63,0:99
19	28220668	.	G	A	222	.	DP=13;AF1=1;CI95=1,1;DP4=0,0,5,6;MQ=36;FQ=-60	GT:PL:GQ	1/1:255,33,0:63
19	28220691	.	T	C	148	.	DP=7;AF1=1;CI95=1,1;DP4=0,0,3,4;MQ=36;FQ=-48	GT:PL:GQ	1/1:181,21,0:39
19	28486996	.	T	C	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
19	28643319	.	C	T	3.55	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:31,3,0:4
19	28643329	.	C	T	4.77	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,1,0;MQ=37;FQ=-30	GT:PL:GQ	0/1:33,3,0:3
19	28714335	.	C	A	6.98	.	DP=1;AF1=1;CI95=0.5,1;DP4=0,0,0,1;MQ=37;FQ=-30	GT:PL:GQ	1/1:36,3,0:4
19	28837706	.	A	T	154	.	DP=13;AF1=1;CI95=1,1;DP4=0,0,3,10;MQ=25;FQ=-66	GT:PL:GQ	1/1:187,39,0:75
19	28837717	.	G	A	154	.	DP=13;AF1=1;CI95=1,1;DP4=0,0,3,10;MQ=25;FQ=-66	GT:PL:GQ	1/1:187,39,0:75
19	28837735	.	A	G	154	.	DP=24;AF1=1;CI95=1,1;DP4=0,0,7,14;MQ=25;FQ=-90	GT:PL:GQ	1/1:187,63,0:99
19	28837767	.	A	G,T	177	.	DP=53;AF1=1;CI95=1,1;DP4=0,0,21,29;MQ=30;FQ=-175	GT:PL:GQ	1/1:210,148,0,204,125,201:99
19	28837787	.	C	T	161	.	DP=66;AF1=1;CI95=1,1;DP4=0,1,30,35;MQ=31;FQ=-206;PV4=1,1,1,1	GT:PL:GQ	1/1:194,179,0:99
19	28837805	.	A	G	222	.	DP=54;AF1=1;CI95=1,1;DP4=0,0,26,26;MQ=32;FQ=-184	GT:PL:GQ	1/1:255,157,0:99