# HG changeset patch # User Jim Johnson # Date 1363803554 18000 # Node ID fe23d90249ee1c4e3fb202283a94f832204461df # Parent 3b0c657b852b1abe5b57dba6654ab8938beb6ff3 Remove help error copied wiki: and is single ampersand diff -r 3b0c657b852b -r fe23d90249ee snpSift_filter.xml --- a/snpSift_filter.xml Wed Feb 06 07:05:27 2013 -0600 +++ b/snpSift_filter.xml Wed Mar 20 13:19:14 2013 -0500 @@ -51,7 +51,7 @@ - *...or any heterozygous sample with coverage 25 or more*: - * **((countHet() > 0) && (DP >= 25)) | (countHom() > 3) | (( exists INDEL ) & (QUAL >= 20)) | (QUAL >= 30 )** + * **((countHet() > 0) & (DP >= 25)) | (countHom() > 3) | (( exists INDEL ) & (QUAL >= 20)) | (QUAL >= 30 )** - *I want to keep samples where the genotype for the first sample is homozygous variant and the genotype for the second sample is reference*: