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when codon has ambiguous nucleotide translate to X
author Jim Johnson <jj@umn.edu>
date Mon, 15 Sep 2014 06:13:47 -0500
parents cdbdac66d6b5
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snpeff_cds_report reports the protein coding changes that result from frame shift and non_synonymous variants.  
It requires the input to be from the MMuFF (Missense Mutation and Frameshift Finder) workflow.  
Specifically it requires the input from snpEff ( http://snpeff.sourceforge.net/ ) set with an Ensembl genome build,
which will annotate variants with Ensembl transctipt IDs.