Mercurial > repos > jjohnson > transindel

annotate tool-data/all_fasta.loc.sample @ 3:eddf2f556a92 draft default tip

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"planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/transindel commit af32e767fd29667d3e29f1a202ad59d3dd498c84-dirty"
author jjohnson
date Mon, 30 Mar 2020 22:06:19 -0400
parents 42d0c1c21cd4
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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42d0c1c21cd4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/transindel commit 057ed8ab513cdb8d8b36929a82ea75f7ddc7889d-dirty"
jjohnson
parents:
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1 #This file lists the locations and dbkeys of all the genome and transcriptome fasta files
42d0c1c21cd4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/transindel commit 057ed8ab513cdb8d8b36929a82ea75f7ddc7889d-dirty"
jjohnson
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2 #under the "genome" directory (a directory that contains a directory
42d0c1c21cd4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/transindel commit 057ed8ab513cdb8d8b36929a82ea75f7ddc7889d-dirty"
jjohnson
parents:
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3 #for each build. This file has the format (white space characters are
42d0c1c21cd4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/transindel commit 057ed8ab513cdb8d8b36929a82ea75f7ddc7889d-dirty"
jjohnson
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4 #TAB characters):
42d0c1c21cd4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/transindel commit 057ed8ab513cdb8d8b36929a82ea75f7ddc7889d-dirty"
jjohnson
parents:
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5 #
42d0c1c21cd4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/transindel commit 057ed8ab513cdb8d8b36929a82ea75f7ddc7889d-dirty"
jjohnson
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6 #<unique_build_id> <dbkey> <display_name> <file_path>
42d0c1c21cd4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/transindel commit 057ed8ab513cdb8d8b36929a82ea75f7ddc7889d-dirty"
jjohnson
parents:
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7 #
42d0c1c21cd4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/transindel commit 057ed8ab513cdb8d8b36929a82ea75f7ddc7889d-dirty"
jjohnson
parents:
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8 #So, all_fasta.loc could look something like this:
42d0c1c21cd4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/transindel commit 057ed8ab513cdb8d8b36929a82ea75f7ddc7889d-dirty"
jjohnson
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9 #
42d0c1c21cd4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/transindel commit 057ed8ab513cdb8d8b36929a82ea75f7ddc7889d-dirty"
jjohnson
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10 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa
42d0c1c21cd4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/transindel commit 057ed8ab513cdb8d8b36929a82ea75f7ddc7889d-dirty"
jjohnson
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11 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa
42d0c1c21cd4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/transindel commit 057ed8ab513cdb8d8b36929a82ea75f7ddc7889d-dirty"
jjohnson
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12 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa
42d0c1c21cd4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/transindel commit 057ed8ab513cdb8d8b36929a82ea75f7ddc7889d-dirty"
jjohnson
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13 #hg19full.87 hg19 Human (Homo sapiens): hg19 Full Trans v87 /path/to/genome/hg19/hg19full.cdna.all.fa
42d0c1c21cd4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/transindel commit 057ed8ab513cdb8d8b36929a82ea75f7ddc7889d-dirty"
jjohnson
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42d0c1c21cd4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/transindel commit 057ed8ab513cdb8d8b36929a82ea75f7ddc7889d-dirty"
jjohnson
parents:
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15 #Your all_fasta.loc file should contain an entry for each individual
42d0c1c21cd4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/transindel commit 057ed8ab513cdb8d8b36929a82ea75f7ddc7889d-dirty"
jjohnson
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16 #fasta file. So there will be multiple fasta files for each build,
42d0c1c21cd4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/transindel commit 057ed8ab513cdb8d8b36929a82ea75f7ddc7889d-dirty"
jjohnson
parents:
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17 #such as with hg19 above.
42d0c1c21cd4 "planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/transindel commit 057ed8ab513cdb8d8b36929a82ea75f7ddc7889d-dirty"
jjohnson
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18 #