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1 #!/usr/bin/env python
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2 #By: Clayton Turner
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3
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4 #imports
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5 import sys
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6 import csv
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7
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8 # error
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9 def stop_err( msg ):
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10 sys.stderr.write( "%s\n" % msg )
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11 sys.exit()
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12
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13 # main
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14 def main():
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15 try:
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16 # retrieve file locations/names
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17 inputFile = sys.argv[1]
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18 output = sys.argv[2]
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19
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20 # open input file
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21 itemList = list()
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22 with open(inputFile) as infile:
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23 for line in infile:
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24 items = line.strip('\n').split('\t')
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25 itemList.append(items)
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26 rows = zip(*itemList)
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27
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28 infile.close()
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29
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30 # open output file
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31 outfile = open(output,'w')
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32 writer = csv.writer(outfile, delimiter='\t')
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33
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34 # append data to output file
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35 for row in rows:
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36 writer.writerow(row)
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37
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38 # close output file
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39 outfile.close()
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40
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41 except Exception, ex:
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42 stop_err('Error running transpose.py\n' + str(ex))
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43
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44 # exit
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45 sys.exit(0)
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46
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47 if __name__ == "__main__":
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48 main()
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