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comparison README @ 4:3d690162d629 draft

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Added more details for the required dependencies.
author Joachim Jacob <joachim.jacob@gmail.com>
date Wed, 20 Mar 2013 09:35:07 +0100
parents 934cd08c77af
children f6ffb9aa409e
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3:9537dd9dd18b 4:3d690162d629
1 qualimap - 1.0.0 1 qualimap - 1.0.1
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3 <joachim.jacob@vib.be> 3 <joachim.jacob@vib.be>
4 4
5 SUMMARY 5 SUMMARY
6 ------- 6 -------
13 13
14 REQUIREMENTS AND INSTALLATION 14 REQUIREMENTS AND INSTALLATION
15 ----------------------------- 15 -----------------------------
16 Install this tool in your Galaxy via the Toolshed 16 Install this tool in your Galaxy via the Toolshed
17 17
18 ) Third party code installation 18 ) Required dependencies:
19 Required: qualimap JAR archives. 19 - Qualimap available in the PATH
20 - Perl
21 - Perl core module File::Temp and File::Basename
22 - Perl module Log::Log4perl
20 23
21 ) Integration into Galaxy 24 ) Integration into Galaxy
22 Please use the toolshed 25 Please use the toolshed
23 26
24 DETAILS AND ISSUES 27 DETAILS AND ISSUES
25 ------------------ 28 ------------------
26 ) Only bamqc provided in this first version 29 ) Qualimap suite provide various quality control tools to apply
27 ) bamqc: allow passing number of threads, and take into account number of 'chunks' 30 after mapping. Only bamqc is provided in this first version
28 ) bamqc: 31 ) bamqc reports various statistics of an alignment.
29 32
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