Mercurial > repos > joachim-jacob > qualimap_suite
diff README @ 2:934cd08c77af draft
Uploaded
author | joachim-jacob |
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date | Tue, 12 Feb 2013 04:48:36 -0500 |
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children | 3d690162d629 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README Tue Feb 12 04:48:36 2013 -0500 @@ -0,0 +1,30 @@ +qualimap - 1.0.0 +===================================================================== +<joachim.jacob@vib.be> + +SUMMARY +------- +Qualimap examines sequencing alignment data in SAM/BAM files and provides an overall view of the data that helps to the detect biases in the sequencing and/or mapping of the data and eases decision-making for further analysis. + +http://qualimap.bioinfo.cipf.es/ + +Garcia-Alcalde et.al, (2012) Qualimap: evaluating next generation sequencing aligmnent data, +Bioinformatics. doi: 10.1093/bioinformatics/bts503 + +REQUIREMENTS AND INSTALLATION +----------------------------- +Install this tool in your Galaxy via the Toolshed + + ) Third party code installation + Required: qualimap JAR archives. + + ) Integration into Galaxy + Please use the toolshed + +DETAILS AND ISSUES +------------------ + ) Only bamqc provided in this first version + ) bamqc: allow passing number of threads, and take into account number of 'chunks' + ) bamqc: + +=====================================================================