Mercurial > repos > john-mccallum > dnaclust
comparison fastaselect.xml @ 5:0b4f4d41b47b draft default tip
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| author | john-mccallum |
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| date | Wed, 26 Jun 2013 22:46:01 -0400 |
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| 4:37acb97e423f | 5:0b4f4d41b47b |
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| 1 <?xml version="1.0"?> | |
| 2 <tool id="fastaselect_1" name="fastaselectclust"> | |
| 3 <description>Get Fasta file of cluster centres from DNAclust output</description> | |
| 4 <command interpreter="bash">fastaselect.sh $inputFastaFile $inputClusterFile $outputfile</command> | |
| 5 <inputs> | |
| 6 <param format="fasta" name="inputFastaFile" type="data" label="Fasta input file"/> | |
| 7 <param format="text" name="inputClusterFile" type="data" label=" Cluster input file from DNAclust"/> | |
| 8 | |
| 9 | |
| 10 </inputs> | |
| 11 <outputs> | |
| 12 | |
| 13 <data format="fasta" name="outputfile" /> | |
| 14 </outputs> | |
| 15 | |
| 16 <help> | |
| 17 | |
| 18 This tool returns a fasta file containing a subset of sequences from an input mult-fasta file and a list of identifiers. | |
| 19 | |
| 20 It was developed as part of the DNACLUST package http://dnaclust.sourceforge.net/ for use in retrieving cluster centres but is handy for any extraction of a sequence subset from Galaxy tabular output | |
| 21 | |
| 22 </help> | |
| 23 </tool> | |
| 24 |