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view count_cluster_size.xml @ 0:84be1fe7e34a draft

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author john-mccallum
date Thu, 06 Sep 2012 23:05:22 -0400
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<?xml version="1.0"?>
<tool id="count_clustersize_1" name="count_clustersize">
  <description>Get cluster size  DNAclust output</description>
  <command>awk 'OFS="\t" {print$1, NF}' $inputClusterFile  > $outputfile </command>
  <inputs>

    <param format="tabular" name="inputClusterFile" type="data" label=" Cluster input file from DNAclust"/>
  </inputs>
  <outputs>
     <data format="tabular" name="outputfile" />
  </outputs>

<help>
Returns the number of members in a  cluster by counting columns from DNA clust output 

</help>
</tool>