# HG changeset patch
# User john-mccallum
# Date 1372300905 14400
# Node ID 17a8f8670dc9685ababfe98aa5238fe2b68106af
# Parent  13656c2d7c7321fa276425fbd161832a958e1f75
Uploaded new fastaselect wrapper

diff -r 13656c2d7c73 -r 17a8f8670dc9 fastaselect.xml
--- a/fastaselect.xml	Wed Jun 26 22:41:02 2013 -0400
+++ b/fastaselect.xml	Wed Jun 26 22:41:45 2013 -0400
@@ -1,10 +1,10 @@
 <?xml version="1.0"?>
 <tool id="fastaselect_1" name="fastaselectclust">
   <description>Get Fasta file of cluster centres from DNAclust output</description>
-  <command>cat $inputClusterFile | fastaselect  -c  -f  $inputFastaFile > $outputfile </command>
+ <command interpreter="bash">fastaselect.sh $inputFile $inputClusterFile  $outputfile</command>
   <inputs>
     <param format="fasta" name="inputFastaFile" type="data" label="Fasta input file"/>
-    <param format="tabular" name="inputClusterFile" type="data" label=" Cluster input file from DNAclust"/>
+    <param format="text" name="inputClusterFile" type="data" label=" Cluster input file from DNAclust"/>
 
 
   </inputs>