Mercurial > repos > john-mccallum > pcr_markers

annotate test-data/ipcress.out @ 5:b321e0517be3 draft

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author ben-warren
date Thu, 22 May 2014 20:30:19 -0400
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5
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ben-warren
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1
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2 Ipcress result
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3 --------------
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ben-warren
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4 Experiment: k69_93535:SAMTOOLS:SNP:1147
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ben-warren
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5 Primers: A B
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ben-warren
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6 Target: k69_93535:filter(unmasked)
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ben-warren
parents:
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7 Matches: 20/20 23/23
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ben-warren
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8 Product: 83 bp (range 50-100)
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9 Result type: forward
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10
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11 ...GGACAGGGAAGCTTCATAGG................................. # forward
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12 ||||||||||||||||||||-->
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13 5'-GGACAGGGAAGCTTCATAGG-3' 3'-CTCCTAAACTAGAAAGTCCAAAC-5' # primers
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14 <--|||||||||||||||||||||||
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15 ..............................CTCCTAAACTAGAAAGTCCAAAC... # revcomp
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ben-warren
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16 --
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17 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 83 A 1088 0 B 1148 0 forward
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ben-warren
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18
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19 Ipcress result
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20 --------------
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ben-warren
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21 Experiment: k69_93535:SAMTOOLS:SNP:1147
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ben-warren
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22 Primers: A B
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23 Target: k69_93535:filter(unmasked)
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ben-warren
parents:
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24 Matches: 21/21 21/21
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ben-warren
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25 Product: 86 bp (range 50-100)
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26 Result type: forward
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27
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28 ...CTTTGAGTCTGAACGCATTTG............................... # forward
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29 |||||||||||||||||||||-->
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30 5'-CTTTGAGTCTGAACGCATTTG-3' 3'-CTTCTTTGCCCTCTACTTTGT-5' # primers
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parents:
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31 <--|||||||||||||||||||||
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32 ...............................CTTCTTTGCCCTCTACTTTGT... # revcomp
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33 --
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34 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 86 A 1109 0 B 1174 0 forward
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35
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36 Ipcress result
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37 --------------
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ben-warren
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38 Experiment: k69_93535:SAMTOOLS:SNP:1147
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39 Primers: A B
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ben-warren
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40 Target: k69_93535:filter(unmasked)
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ben-warren
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41 Matches: 20/20 20/20
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ben-warren
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42 Product: 87 bp (range 50-100)
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43 Result type: forward
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44
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45 ...TTTGAGTCTGAACGCATTTG.............................. # forward
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46 ||||||||||||||||||||-->
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ben-warren
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47 5'-TTTGAGTCTGAACGCATTTG-3' 3'-CTTTGCCCTCTACTTTGTTC-5' # primers
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ben-warren
parents:
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48 <--||||||||||||||||||||
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49 ..............................CTTTGCCCTCTACTTTGTTC... # revcomp
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50 --
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51 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 87 A 1110 0 B 1177 0 forward
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52
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53 Ipcress result
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54 --------------
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ben-warren
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55 Experiment: k69_93535:SAMTOOLS:SNP:1147
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ben-warren
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56 Primers: A B
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ben-warren
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57 Target: k69_93535:filter(unmasked)
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ben-warren
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58 Matches: 21/21 21/21
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ben-warren
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59 Product: 89 bp (range 50-100)
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60 Result type: forward
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61
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62 ...CTTTGAGTCTGAACGCATTTG............................... # forward
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63 |||||||||||||||||||||-->
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ben-warren
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64 5'-CTTTGAGTCTGAACGCATTTG-3' 3'-CTTTGCCCTCTACTTTGTTCT-5' # primers
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ben-warren
parents:
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65 <--|||||||||||||||||||||
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66 ...............................CTTTGCCCTCTACTTTGTTCT... # revcomp
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ben-warren
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67 --
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68 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 89 A 1109 0 B 1177 0 forward
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69
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70 Ipcress result
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71 --------------
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ben-warren
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72 Experiment: k69_93535:SAMTOOLS:SNP:1147
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ben-warren
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73 Primers: A B
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ben-warren
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74 Target: k69_93535:filter(unmasked)
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ben-warren
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75 Matches: 21/21 21/21
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76 Product: 93 bp (range 50-100)
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77 Result type: forward
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78
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79 ...CTTTGAGTCTGAACGCATTTG............................... # forward
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80 |||||||||||||||||||||-->
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ben-warren
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81 5'-CTTTGAGTCTGAACGCATTTG-3' 3'-GCCCTCTACTTTGTTCTAAAC-5' # primers
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ben-warren
parents:
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82 <--|||||||||||||||||||||
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ben-warren
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83 ...............................GCCCTCTACTTTGTTCTAAAC... # revcomp
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ben-warren
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84 --
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85 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 93 A 1109 0 B 1181 0 forward
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ben-warren
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86
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87 Ipcress result
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88 --------------
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ben-warren
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89 Experiment: k69_93535:SAMTOOLS:SNP:1336
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ben-warren
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90 Primers: A B
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91 Target: k69_93535:filter(unmasked)
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ben-warren
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92 Matches: 20/20 22/22
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93 Product: 82 bp (range 50-100)
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94 Result type: forward
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95
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96 ...TTAGAAGGAACGCGAGAAGG................................ # forward
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97 ||||||||||||||||||||-->
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ben-warren
parents:
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98 5'-TTAGAAGGAACGCGAGAAGG-3' 3'-GAATGCGGATCAAACCAACAAC-5' # primers
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parents:
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99 <--||||||||||||||||||||||
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100 ..............................GAATGCGGATCAAACCAACAAC... # revcomp
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101 --
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102 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 82 A 1297 0 B 1357 0 forward
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103
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104 Ipcress result
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105 --------------
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ben-warren
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106 Experiment: k69_93535:SAMTOOLS:SNP:1336
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ben-warren
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107 Primers: A B
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ben-warren
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108 Target: k69_93535:filter(unmasked)
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109 Matches: 20/20 20/20
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110 Product: 85 bp (range 50-100)
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111 Result type: forward
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112
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113 ...TTTAGAAGGAACGCGAGAAG.............................. # forward
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114 ||||||||||||||||||||-->
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ben-warren
parents:
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115 5'-TTTAGAAGGAACGCGAGAAG-3' 3'-GCGGATCAAACCAACAACAA-5' # primers
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parents:
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116 <--||||||||||||||||||||
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117 ..............................GCGGATCAAACCAACAACAA... # revcomp
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118 --
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119 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 85 A 1296 0 B 1361 0 forward
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120
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121 Ipcress result
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122 --------------
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ben-warren
parents:
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123 Experiment: k69_93535:SAMTOOLS:SNP:1336
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ben-warren
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124 Primers: A B
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ben-warren
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125 Target: k69_93535:filter(unmasked)
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ben-warren
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126 Matches: 21/21 20/20
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127 Product: 86 bp (range 50-100)
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128 Result type: forward
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129
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130 ...GTTTAGAAGGAACGCGAGAAG.............................. # forward
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131 |||||||||||||||||||||-->
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ben-warren
parents:
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132 5'-GTTTAGAAGGAACGCGAGAAG-3' 3'-GCGGATCAAACCAACAACAA-5' # primers
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parents:
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133 <--||||||||||||||||||||
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134 ...............................GCGGATCAAACCAACAACAA... # revcomp
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135 --
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136 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 86 A 1295 0 B 1361 0 forward
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137
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138 Ipcress result
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139 --------------
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ben-warren
parents:
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140 Experiment: k69_93535:SAMTOOLS:SNP:1336
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ben-warren
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141 Primers: A B
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ben-warren
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142 Target: k69_93535:filter(unmasked)
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ben-warren
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143 Matches: 20/20 22/22
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ben-warren
parents:
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144 Product: 87 bp (range 50-100)
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145 Result type: forward
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146
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147 ...TTAGAAGGAACGCGAGAAGG................................ # forward
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parents:
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148 ||||||||||||||||||||-->
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ben-warren
parents:
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149 5'-TTAGAAGGAACGCGAGAAGG-3' 3'-CGGATCAAACCAACAACAACTC-5' # primers
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ben-warren
parents:
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150 <--||||||||||||||||||||||
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ben-warren
parents:
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151 ..............................CGGATCAAACCAACAACAACTC... # revcomp
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152 --
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153 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 87 A 1297 0 B 1362 0 forward
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154
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155 Ipcress result
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ben-warren
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156 --------------
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ben-warren
parents:
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157 Experiment: k69_93535:SAMTOOLS:SNP:1336
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ben-warren
parents:
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158 Primers: A B
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ben-warren
parents:
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159 Target: k69_93535:filter(unmasked)
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ben-warren
parents:
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160 Matches: 20/20 22/22
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ben-warren
parents:
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161 Product: 88 bp (range 50-100)
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162 Result type: forward
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parents:
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163
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164 ...TTAGAAGGAACGCGAGAAGG................................ # forward
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parents:
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165 ||||||||||||||||||||-->
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ben-warren
parents:
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166 5'-TTAGAAGGAACGCGAGAAGG-3' 3'-GGATCAAACCAACAACAACTCG-5' # primers
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ben-warren
parents:
diff changeset
167 <--||||||||||||||||||||||
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parents:
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168 ..............................GGATCAAACCAACAACAACTCG... # revcomp
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169 --
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170 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 88 A 1297 0 B 1363 0 forward
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171
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172 Ipcress result
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173 --------------
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ben-warren
parents:
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174 Experiment: k69_98089:SAMTOOLS:SNP:30
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ben-warren
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175 Primers: A B
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ben-warren
parents:
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176 Target: k69_98089:filter(unmasked)
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ben-warren
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177 Matches: 25/25 19/19
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178 Product: 88 bp (range 50-100)
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179 Result type: forward
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parents:
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180
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181 ...CAAATCCAAACATGTTATCTTCTTC............................. # forward
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parents:
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182 |||||||||||||||||||||||||-->
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ben-warren
parents:
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183 5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-GCGAGTTGCAGTCTAGTAG-5' # primers
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ben-warren
parents:
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184 <--|||||||||||||||||||
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ben-warren
parents:
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185 ...................................GCGAGTTGCAGTCTAGTAG... # revcomp
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parents:
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186 --
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parents:
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187 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 88 A 1 0 B 70 0 forward
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188
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189 Ipcress result
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190 --------------
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ben-warren
parents:
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191 Experiment: k69_98089:SAMTOOLS:SNP:30
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ben-warren
parents:
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192 Primers: A B
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ben-warren
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193 Target: k69_98089:filter(unmasked)
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ben-warren
parents:
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194 Matches: 25/25 20/20
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ben-warren
parents:
diff changeset
195 Product: 90 bp (range 50-100)
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
196 Result type: forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
197
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
198 ...CAAATCCAAACATGTTATCTTCTTC.............................. # forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
199 |||||||||||||||||||||||||-->
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
200 5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-CGAGTTGCAGTCTAGTAGTT-5' # primers
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
201 <--||||||||||||||||||||
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
202 ...................................CGAGTTGCAGTCTAGTAGTT... # revcomp
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
203 --
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
204 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 90 A 1 0 B 71 0 forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
205
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
206 Ipcress result
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
207 --------------
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
208 Experiment: k69_98089:SAMTOOLS:SNP:30
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
209 Primers: A B
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
210 Target: k69_98089:filter(unmasked)
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
211 Matches: 25/25 21/21
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
212 Product: 91 bp (range 50-100)
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
213 Result type: forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
214
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
215 ...CAAATCCAAACATGTTATCTTCTTC............................... # forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
216 |||||||||||||||||||||||||-->
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
217 5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-CGAGTTGCAGTCTAGTAGTTG-5' # primers
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
218 <--|||||||||||||||||||||
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
219 ...................................CGAGTTGCAGTCTAGTAGTTG... # revcomp
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
220 --
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
221 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 91 A 1 0 B 71 0 forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
222
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
223 Ipcress result
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
224 --------------
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
225 Experiment: k69_98089:SAMTOOLS:SNP:30
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
226 Primers: A B
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
227 Target: k69_98089:filter(unmasked)
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
228 Matches: 25/25 20/20
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
229 Product: 96 bp (range 50-100)
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
230 Result type: forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
231
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
232 ...CAAATCCAAACATGTTATCTTCTTC.............................. # forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
233 |||||||||||||||||||||||||-->
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
234 5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-GCAGTCTAGTAGTTGTGCTT-5' # primers
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
235 <--||||||||||||||||||||
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
236 ...................................GCAGTCTAGTAGTTGTGCTT... # revcomp
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
237 --
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
238 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 96 A 1 0 B 77 0 forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
239
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
240 Ipcress result
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
241 --------------
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
242 Experiment: k69_98089:SAMTOOLS:SNP:30
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
243 Primers: A B
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
244 Target: k69_98089:filter(unmasked)
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
245 Matches: 25/25 21/21
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
246 Product: 97 bp (range 50-100)
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
247 Result type: forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
248
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
249 ...CAAATCCAAACATGTTATCTTCTTC............................... # forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
250 |||||||||||||||||||||||||-->
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
251 5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-GCAGTCTAGTAGTTGTGCTTG-5' # primers
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
252 <--|||||||||||||||||||||
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
253 ...................................GCAGTCTAGTAGTTGTGCTTG... # revcomp
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
254 --
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
255 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 97 A 1 0 B 77 0 forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
256
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
257 Ipcress result
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
258 --------------
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
259 Experiment: k69_98089:SAMTOOLS:SNP:550
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
260 Primers: A B
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
261 Target: k69_98089:filter(unmasked)
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
262 Matches: 22/22 24/24
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
263 Product: 88 bp (range 50-100)
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
264 Result type: forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
265
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
266 ...TGAATTGATACTGAAATTCGGG.................................. # forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
267 ||||||||||||||||||||||-->
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
268 5'-TGAATTGATACTGAAATTCGGG-3' 3'-CTAACACCTTTGAAAGTACATACG-5' # primers
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
269 <--||||||||||||||||||||||||
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
270 ................................CTAACACCTTTGAAAGTACATACG... # revcomp
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
271 --
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
272 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 88 A 499 0 B 563 0 forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
273
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
274 Ipcress result
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
275 --------------
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
276 Experiment: k69_98089:SAMTOOLS:SNP:550
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
277 Primers: A B
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
278 Target: k69_98089:filter(unmasked)
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
279 Matches: 22/22 24/24
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
280 Product: 77 bp (range 50-100)
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
281 Result type: forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
282
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
283 ...TGAAATTCGGGAAGACTGAAAG.................................. # forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
284 ||||||||||||||||||||||-->
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
285 5'-TGAAATTCGGGAAGACTGAAAG-3' 3'-CTAACACCTTTGAAAGTACATACG-5' # primers
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
286 <--||||||||||||||||||||||||
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
287 ................................CTAACACCTTTGAAAGTACATACG... # revcomp
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
288 --
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
289 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 77 A 510 0 B 563 0 forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
290
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
291 Ipcress result
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
292 --------------
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
293 Experiment: k69_98089:SAMTOOLS:SNP:550
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
294 Primers: A B
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
295 Target: k69_98089:filter(unmasked)
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
296 Matches: 19/19 25/25
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
297 Product: 75 bp (range 50-100)
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
298 Result type: forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
299
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
300 ...CGGGAAGACTGAAAGAACG................................... # forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
301 |||||||||||||||||||-->
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
302 5'-CGGGAAGACTGAAAGAACG-3' 3'-CACCTTTGAAAGTACATACGATAGA-5' # primers
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
303 <--|||||||||||||||||||||||||
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
304 .............................CACCTTTGAAAGTACATACGATAGA... # revcomp
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
305 --
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
306 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 75 A 517 0 B 567 0 forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
307
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
308 Ipcress result
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
309 --------------
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
310 Experiment: k69_98089:SAMTOOLS:SNP:550
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
311 Primers: A B
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
312 Target: k69_98089:filter(unmasked)
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
313 Matches: 21/21 25/25
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
314 Product: 81 bp (range 50-100)
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
315 Result type: forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
316
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
317 ...GAAATTCGGGAAGACTGAAAG................................... # forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
318 |||||||||||||||||||||-->
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
319 5'-GAAATTCGGGAAGACTGAAAG-3' 3'-CACCTTTGAAAGTACATACGATAGA-5' # primers
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
320 <--|||||||||||||||||||||||||
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
321 ...............................CACCTTTGAAAGTACATACGATAGA... # revcomp
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
322 --
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
323 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 81 A 511 0 B 567 0 forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
324
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
325 Ipcress result
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
326 --------------
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
327 Experiment: k69_98089:SAMTOOLS:SNP:550
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
328 Primers: A B
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
329 Target: k69_98089:filter(unmasked)
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
330 Matches: 22/22 25/25
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
331 Product: 79 bp (range 50-100)
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
332 Result type: forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
333
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
334 ...AATTCGGGAAGACTGAAAGAAC................................... # forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
335 ||||||||||||||||||||||-->
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
336 5'-AATTCGGGAAGACTGAAAGAAC-3' 3'-CACCTTTGAAAGTACATACGATAGA-5' # primers
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
337 <--|||||||||||||||||||||||||
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
338 ................................CACCTTTGAAAGTACATACGATAGA... # revcomp
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
339 --
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
340 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 79 A 513 0 B 567 0 forward
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
341 -- completed ipcress analysis