Mercurial > repos > john-mccallum > pcr_markers

annotate test-data/mpileup_out.vcf @ 6:f201e8c6e004 draft default tip

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author ben-warren
date Mon, 07 Jul 2014 19:28:17 -0400
parents b321e0517be3
children
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1 ##fileformat=VCFv4.1
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2 ##samtoolsVersion=0.1.19-44428cd
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3 ##reference=file:///tmp/tmp-SAMTOOLS-zkHTpr/reference_input.fa
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4 ##contig=<ID=Chr1,length=17971566>
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5 ##contig=<ID=Chr10,length=15490421>
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6 ##contig=<ID=Chr11,length=17082262>
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7 ##contig=<ID=Chr12,length=13002763>
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8 ##contig=<ID=Chr13,length=17372821>
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9 ##contig=<ID=Chr14,length=12031045>
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10 ##contig=<ID=Chr15,length=19001909>
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11 ##contig=<ID=Chr16,length=11476499>
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12 ##contig=<ID=Chr17,length=14675105>
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13 ##contig=<ID=Chr18,length=14814751>
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14 ##contig=<ID=Chr19,length=11145676>
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15 ##contig=<ID=Chr2,length=15003700>
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16 ##contig=<ID=Chr20,length=14375345>
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17 ##contig=<ID=Chr21,length=14287830>
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18 ##contig=<ID=Chr22,length=12982530>
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19 ##contig=<ID=Chr23,length=20688064>
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20 ##contig=<ID=Chr24,length=17702303>
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21 ##contig=<ID=Chr25,length=14321294>
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22 ##contig=<ID=Chr26,length=17153587>
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23 ##contig=<ID=Chr27,length=10917718>
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24 ##contig=<ID=Chr28,length=16406049>
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25 ##contig=<ID=Chr29,length=14180785>
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26 ##contig=<ID=Chr3,length=20519224>
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27 ##contig=<ID=Chr4,length=13065296>
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28 ##contig=<ID=Chr5,length=18825850>
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29 ##contig=<ID=Chr6,length=18208465>
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30 ##contig=<ID=Chr7,length=18704015>
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31 ##contig=<ID=Chr8,length=21083321>
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32 ##contig=<ID=Chr9,length=11598160>
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33 ##contig=<ID=Unknow,length=177361715>
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34 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
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35 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
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36 ##INFO=<ID=MQ,Number=1,Type=Integer,Description="Root-mean-square mapping quality of covering reads">
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37 ##INFO=<ID=FQ,Number=1,Type=Float,Description="Phred probability of all samples being the same">
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38 ##INFO=<ID=AF1,Number=1,Type=Float,Description="Max-likelihood estimate of the first ALT allele frequency (assuming HWE)">
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39 ##INFO=<ID=AC1,Number=1,Type=Float,Description="Max-likelihood estimate of the first ALT allele count (no HWE assumption)">
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40 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
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41 ##INFO=<ID=IS,Number=2,Type=Float,Description="Maximum number of reads supporting an indel and fraction of indel reads">
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42 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes for each ALT allele, in the same order as listed">
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43 ##INFO=<ID=G3,Number=3,Type=Float,Description="ML estimate of genotype frequencies">
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44 ##INFO=<ID=HWE,Number=1,Type=Float,Description="Chi^2 based HWE test P-value based on G3">
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45 ##INFO=<ID=CLR,Number=1,Type=Integer,Description="Log ratio of genotype likelihoods with and without the constraint">
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46 ##INFO=<ID=UGT,Number=1,Type=String,Description="The most probable unconstrained genotype configuration in the trio">
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47 ##INFO=<ID=CGT,Number=1,Type=String,Description="The most probable constrained genotype configuration in the trio">
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48 ##INFO=<ID=PV4,Number=4,Type=Float,Description="P-values for strand bias, baseQ bias, mapQ bias and tail distance bias">
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49 ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
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50 ##INFO=<ID=PC2,Number=2,Type=Integer,Description="Phred probability of the nonRef allele frequency in group1 samples being larger (,smaller) than in group2.">
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51 ##INFO=<ID=PCHI2,Number=1,Type=Float,Description="Posterior weighted chi^2 P-value for testing the association between group1 and group2 samples.">
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52 ##INFO=<ID=QCHI2,Number=1,Type=Integer,Description="Phred scaled PCHI2.">
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53 ##INFO=<ID=PR,Number=1,Type=Integer,Description="# permutations yielding a smaller PCHI2.">
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54 ##INFO=<ID=QBD,Number=1,Type=Float,Description="Quality by Depth: QUAL/#reads">
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55 ##INFO=<ID=RPB,Number=1,Type=Float,Description="Read Position Bias">
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56 ##INFO=<ID=MDV,Number=1,Type=Integer,Description="Maximum number of high-quality nonRef reads in samples">
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57 ##INFO=<ID=VDB,Number=1,Type=Float,Description="Variant Distance Bias (v2) for filtering splice-site artefacts in RNA-seq data. Note: this version may be broken.">
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58 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
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59 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
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60 ##FORMAT=<ID=GL,Number=3,Type=Float,Description="Likelihoods for RR,RA,AA genotypes (R=ref,A=alt)">
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61 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="# high-quality bases">
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62 ##FORMAT=<ID=DV,Number=1,Type=Integer,Description="# high-quality non-reference bases">
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63 ##FORMAT=<ID=SP,Number=1,Type=Integer,Description="Phred-scaled strand bias P-value">
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64 ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
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65 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT /tmp/tmp-SAMTOOLS-zkHTpr/bam_input_0.bam
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66 Chr1 14086 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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67 Chr1 14087 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
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68 Chr1 14088 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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69 Chr1 14089 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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70 Chr1 14090 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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71 Chr1 14091 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
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72 Chr1 14092 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
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73 Chr1 14093 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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74 Chr1 14094 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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75 Chr1 14095 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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76 Chr1 14096 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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77 Chr1 14097 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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78 Chr1 14098 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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79 Chr1 14099 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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80 Chr1 14100 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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81 Chr1 14101 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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82 Chr1 14102 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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83 Chr1 14103 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
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84 Chr1 14104 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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85 Chr1 14105 . T . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
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86 Chr1 14106 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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87 Chr1 14107 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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88 Chr1 14108 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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89 Chr1 14109 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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90 Chr1 14110 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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91 Chr1 14111 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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92 Chr1 14112 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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93 Chr1 14113 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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94 Chr1 14114 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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95 Chr1 14115 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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96 Chr1 14116 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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97 Chr1 14117 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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98 Chr1 14118 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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99 Chr1 14119 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
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100 Chr1 14120 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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101 Chr1 14121 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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102 Chr1 14122 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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103 Chr1 14123 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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104 Chr1 14124 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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105 Chr1 14125 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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106 Chr1 14126 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
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107 Chr1 14127 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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108 Chr1 14128 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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109 Chr1 14129 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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110 Chr1 14130 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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111 Chr1 14131 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
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112 Chr1 14132 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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113 Chr1 14133 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
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114 Chr1 14134 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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115 Chr1 14135 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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116 Chr1 14136 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
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117 Chr1 14137 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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118 Chr1 14138 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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119 Chr1 14139 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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120 Chr1 14140 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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121 Chr1 14141 . T . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
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122 Chr1 14142 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
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123 Chr1 14143 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
124 Chr1 14144 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
125 Chr1 14145 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
126 Chr1 14146 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
127 Chr1 14147 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
128 Chr1 14148 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
129 Chr1 14149 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
130 Chr1 14150 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
131 Chr1 14151 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
132 Chr1 14152 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
133 Chr1 14153 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
134 Chr1 14154 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
135 Chr1 14155 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
136 Chr1 14156 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
137 Chr1 14157 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
138 Chr1 14158 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
139 Chr1 14159 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
140 Chr1 14160 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
141 Chr1 14161 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
142 Chr1 14162 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
143 Chr1 14163 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
144 Chr1 14164 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
145 Chr1 14165 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
146 Chr1 14166 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
147 Chr1 14167 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
148 Chr1 14168 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
149 Chr1 14169 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
150 Chr1 14170 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
151 Chr1 14171 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
152 Chr1 14172 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
153 Chr1 14173 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
154 Chr1 14174 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
155 Chr1 14175 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
156 Chr1 14176 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
157 Chr1 14177 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
158 Chr1 14178 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
159 Chr1 14179 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
160 Chr1 14180 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
161 Chr1 14181 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
162 Chr1 14182 . T . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
163 Chr1 14183 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
164 Chr1 14184 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
165 Chr1 14185 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
166 Chr1 14230 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
167 Chr1 14231 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
168 Chr1 14232 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
169 Chr1 14233 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
170 Chr1 14234 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
171 Chr1 14235 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
172 Chr1 14236 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
173 Chr1 14237 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
174 Chr1 14238 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
175 Chr1 14239 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
176 Chr1 14240 . C . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
177 Chr1 14241 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
178 Chr1 14242 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
179 Chr1 14243 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
180 Chr1 14244 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
181 Chr1 14245 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
182 Chr1 14246 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
183 Chr1 14247 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
184 Chr1 14248 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
185 Chr1 14249 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
186 Chr1 14250 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
187 Chr1 14251 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
188 Chr1 14252 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
189 Chr1 14253 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
190 Chr1 14254 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
191 Chr1 14255 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
192 Chr1 14256 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
193 Chr1 14257 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
194 Chr1 14258 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
195 Chr1 14259 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
196 Chr1 14260 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
197 Chr1 14261 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
198 Chr1 14262 . T . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
199 Chr1 14263 . T . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
200 Chr1 14264 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
201 Chr1 14265 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
202 Chr1 14266 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
203 Chr1 14267 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
204 Chr1 14268 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
205 Chr1 14269 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
206 Chr1 14270 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
207 Chr1 14271 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
208 Chr1 14272 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
209 Chr1 14273 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
210 Chr1 14274 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
211 Chr1 14275 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
212 Chr1 14276 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
213 Chr1 14277 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
214 Chr1 14278 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
215 Chr1 14279 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
216 Chr1 14280 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
217 Chr1 14281 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
218 Chr1 14282 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
219 Chr1 14283 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
220 Chr1 14284 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
221 Chr1 14285 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
222 Chr1 14286 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
223 Chr1 14287 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
224 Chr1 14288 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
225 Chr1 14289 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
226 Chr1 14290 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
227 Chr1 14291 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
228 Chr1 14292 . T . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
229 Chr1 14293 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
230 Chr1 14294 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
231 Chr1 14295 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
232 Chr1 14296 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
233 Chr1 14297 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
234 Chr1 14298 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
235 Chr1 14299 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
236 Chr1 14300 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
237 Chr1 14301 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
238 Chr1 14302 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
239 Chr1 14303 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
240 Chr1 14304 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
241 Chr1 14305 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
242 Chr1 14306 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
243 Chr1 14307 . C . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
244 Chr1 14308 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
245 Chr1 14309 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
246 Chr1 14310 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
247 Chr1 14311 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
248 Chr1 14312 . C . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
249 Chr1 14313 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
250 Chr1 14314 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
251 Chr1 14315 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
252 Chr1 14316 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
253 Chr1 14317 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
254 Chr1 14318 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
255 Chr1 14319 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
256 Chr1 14320 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
257 Chr1 14320 . TC . 33.5 . INDEL;IS=1,1.000000;DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-39 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
258 Chr1 14321 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
259 Chr1 14322 . T . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
260 Chr1 14323 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
261 Chr1 14324 . T . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
262 Chr1 14325 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
263 Chr1 14326 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
264 Chr1 14327 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
265 Chr1 14328 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
266 Chr1 120479 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
267 Chr1 120480 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
268 Chr1 120481 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
269 Chr1 120482 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
270 Chr1 120483 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
271 Chr1 120484 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
272 Chr1 120485 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
273 Chr1 120486 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
274 Chr1 120487 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
275 Chr1 120488 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
276 Chr1 120489 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
277 Chr1 120490 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
278 Chr1 120491 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
279 Chr1 120492 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
280 Chr1 120493 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
281 Chr1 120494 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
282 Chr1 120495 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
283 Chr1 120496 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
284 Chr1 120497 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
285 Chr1 120498 . C . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
286 Chr1 120499 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
287 Chr1 120500 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
288 Chr1 120501 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
289 Chr1 120502 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
290 Chr1 120503 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
291 Chr1 120504 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
292 Chr1 120505 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
293 Chr1 120506 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
294 Chr1 120507 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
295 Chr1 120508 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
296 Chr1 120509 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
297 Chr1 120510 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
298 Chr1 120511 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
299 Chr1 120512 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
300 Chr1 120513 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
301 Chr1 120514 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
302 Chr1 120515 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
303 Chr1 120516 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
304 Chr1 120517 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
305 Chr1 120518 . C . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
306 Chr1 120519 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
307 Chr1 120520 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
308 Chr1 120521 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
309 Chr1 120522 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
310 Chr1 120523 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
311 Chr1 120524 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
312 Chr1 120525 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
313 Chr1 120526 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
314 Chr1 120527 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
315 Chr1 120528 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
316 Chr1 120529 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
317 Chr1 120530 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
318 Chr1 120531 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
319 Chr1 120532 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
320 Chr1 120533 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
321 Chr1 120534 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
322 Chr1 120535 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
323 Chr1 120536 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
324 Chr1 120537 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
325 Chr1 120538 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
326 Chr1 120539 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
327 Chr1 120540 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
328 Chr1 120541 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
329 Chr1 120542 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
330 Chr1 120543 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
331 Chr1 120544 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
332 Chr1 120545 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
333 Chr1 120546 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
334 Chr1 120547 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
335 Chr1 120548 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
336 Chr1 120549 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
337 Chr1 120550 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
338 Chr1 120551 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
339 Chr1 120552 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
340 Chr1 120553 . C . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
341 Chr1 120554 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
342 Chr1 120555 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
343 Chr1 120556 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
344 Chr1 120557 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
345 Chr1 120558 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
346 Chr1 120559 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
347 Chr1 120560 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
348 Chr1 120561 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
349 Chr1 120562 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
350 Chr1 120563 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
351 Chr1 120564 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
352 Chr1 120565 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
353 Chr1 120566 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
354 Chr1 120567 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
355 Chr1 120568 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
356 Chr1 120569 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
357 Chr1 120570 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
358 Chr1 120571 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
359 Chr1 120572 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
360 Chr1 120573 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
361 Chr1 120574 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
362 Chr1 120575 . T . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
363 Chr1 120576 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
364 Chr1 120577 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
365 Chr1 120578 . C . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
366 Chr1 120594 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
367 Chr1 120595 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
368 Chr1 120596 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
369 Chr1 120597 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
370 Chr1 120598 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
371 Chr1 120599 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
372 Chr1 120600 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
373 Chr1 120601 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
374 Chr1 120602 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
375 Chr1 120603 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
376 Chr1 120604 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
377 Chr1 120605 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
378 Chr1 120606 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
379 Chr1 120607 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
380 Chr1 120608 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
381 Chr1 120609 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
382 Chr1 120610 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
383 Chr1 120611 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
384 Chr1 120612 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
385 Chr1 120613 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
386 Chr1 120614 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
387 Chr1 120615 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
388 Chr1 120616 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
389 Chr1 120617 . T . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
390 Chr1 120618 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
391 Chr1 120619 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
392 Chr1 120620 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
393 Chr1 120621 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
394 Chr1 120622 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
395 Chr1 120623 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
396 Chr1 120624 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
397 Chr1 120625 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
398 Chr1 120626 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
399 Chr1 120627 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
400 Chr1 120628 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
401 Chr1 120629 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
402 Chr1 120630 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
403 Chr1 120631 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
404 Chr1 120632 . C . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
405 Chr1 120633 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
406 Chr1 120634 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
407 Chr1 120635 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
408 Chr1 120636 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
409 Chr1 120637 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
410 Chr1 120638 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
411 Chr1 120639 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
412 Chr1 120640 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
413 Chr1 120641 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
414 Chr1 120642 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
415 Chr1 120643 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
416 Chr1 120644 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
417 Chr1 120645 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
418 Chr1 120646 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
419 Chr1 120647 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
420 Chr1 120648 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
421 Chr1 120649 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
422 Chr1 120650 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
423 Chr1 120651 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
424 Chr1 120652 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
425 Chr1 120653 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
426 Chr1 120654 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
427 Chr1 120655 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
428 Chr1 120656 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
429 Chr1 120657 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
430 Chr1 120658 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
431 Chr1 120659 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
432 Chr1 120660 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
433 Chr1 120661 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
434 Chr1 120662 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
435 Chr1 120663 . T . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
436 Chr1 120664 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
437 Chr1 120665 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
438 Chr1 120666 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
439 Chr1 120667 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
440 Chr1 120668 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
441 Chr1 120669 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
442 Chr1 120670 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
443 Chr1 120671 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
444 Chr1 120672 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
445 Chr1 120673 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
446 Chr1 120674 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
447 Chr1 120675 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
448 Chr1 120676 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
449 Chr1 120677 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
450 Chr1 120678 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
451 Chr1 120679 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
452 Chr1 120680 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
453 Chr1 120681 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
454 Chr1 120682 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
455 Chr1 120683 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
456 Chr1 120684 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
457 Chr1 120685 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
458 Chr1 120686 . T . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
459 Chr1 120687 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
460 Chr1 120688 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
461 Chr1 120689 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
462 Chr1 120690 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
463 Chr1 120691 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
464 Chr1 120692 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,0,1;MQ=0;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
465 Chr1 120693 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=0,1,0,0;MQ=0;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
466 Chr1 1072445 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=8;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
467 Chr1 1072446 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
468 Chr1 1072447 . C . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
469 Chr1 1072448 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
470 Chr1 1072449 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=8;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
471 Chr1 1072450 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
472 Chr1 1072451 . T . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=8;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
473 Chr1 1072452 . T . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
474 Chr1 1072453 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=8;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
475 Chr1 1072454 . A . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=8;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
476 Chr1 1072455 . G . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=8;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
477 Chr1 1072456 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
478 Chr1 1072457 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
479 Chr1 1072458 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
480 Chr1 1072459 . T . 26 . DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=8;FQ=-31.4 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
481 Chr1 1072460 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
482 Chr1 1072461 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
483 Chr1 1072461 . A . 33.5 . INDEL;IS=1,1.000000;DP=1;AF1=1;AC1=2;DP4=0,0,1,0;MQ=8;FQ=-39 PL 4
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
484 Chr1 1072462 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
485 Chr1 1072463 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
486 Chr1 1072464 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
487 Chr1 1072465 . A . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
488 Chr1 1072466 . G . 31.5 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-31.4 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
489 Chr1 1072467 . A . 32 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-31 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
490 Chr1 1072468 . G . 32.4 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-30.6 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
491 Chr1 1072469 . G . 32.4 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-30.6 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
492 Chr1 1072470 . A . 32.4 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-30.6 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
493 Chr1 1072471 . T . 32.4 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-30.6 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
494 Chr1 1072472 . C . 32.4 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-30.6 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
495 Chr1 1072473 . C . 32.4 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-30.6 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
496 Chr1 1072474 . A . 32.4 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-30.6 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
497 Chr1 1072475 . G . 32.4 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-30.6 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
498 Chr1 1072476 . T . 32.4 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-30.6 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
499 Chr1 1072477 . A . 32.4 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-30.6 PL 0
b321e0517be3 Uploaded
ben-warren
parents:
diff changeset
500 Chr1 1072478 . A . 32.4 . DP=1;AF1=0;AC1=0;DP4=1,0,0,0;MQ=8;FQ=-30.6 PL 0