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comparison design_primers.xml @ 1:a0689dc29b7f draft

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Updated vcf to gff conversion tool
author john-mccallum
date Tue, 31 Jul 2012 00:33:11 -0400
parents 21053f7f9ed1
children b321e0517be3
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0:21053f7f9ed1 1:a0689dc29b7f
3 <description>Design PCR Primers to Features</description> 3 <description>Design PCR Primers to Features</description>
4 <command interpreter="python">design_primers.py $inputfastaFile $inputSNPfile $inputTargetfile $min_size $max_size > $primer_outputfile </command> 4 <command interpreter="python">design_primers.py $inputfastaFile $inputSNPfile $inputTargetfile $min_size $max_size > $primer_outputfile </command>
5 <inputs> 5 <inputs>
6 <param format="fasta" name="inputfastaFile" type="data" label="Multifasta Source file" /> 6 <param format="fasta" name="inputfastaFile" type="data" label="Multifasta Source file" />
7 <param format="gff3" name="inputSNPfile" type="data" label="annotation file(Gff3)" /> 7 <param format="gff3" name="inputSNPfile" type="data" label="annotation file(Gff3)" />
8 <param format="txt" name="inputTargetfile" type="data" optional="false" label="Target file" help="Format:Sequence id:source:type:start, such as 1174806:gsMapper:SNP:292" ></param> 8 <param format="txt" name="inputTargetfile" type="data" optional="false" label="Target file" help="IN FORMAT Sequence id:source:type:start e.g. 1174806:gsMapper:SNP:292" ></param>
9 <param name="min_size" size="20" type="text" value="75" label="Minimum Product Size Range" /> 9 <param name="min_size" size="20" type="text" value="75" label="Minimum Product Size Range" />
10 <param name="max_size" size="20" type="text" value="100" label="Maximum Product Size Range" /> 10 <param name="max_size" size="20" type="text" value="100" label="Maximum Product Size Range" />
11 </inputs> 11 </inputs>
12 <outputs> 12 <outputs>
13 <data format="tabular" name="primer_outputfile" /> 13 <data format="tabular" name="primer_outputfile" />