Mercurial > repos > john-mccallum > pcr_markers

comparison find_CAPS.xml @ 5:b321e0517be3 draft

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Uploaded
author ben-warren
date Thu, 22 May 2014 20:30:19 -0400
parents 21053f7f9ed1
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4:be070a68521e 5:b321e0517be3
7 <param format="fasta" name="inputFasta" type="data" label="fasta source file" /> 7 <param format="fasta" name="inputFasta" type="data" label="fasta source file" />
8 </inputs> 8 </inputs>
9 <outputs> 9 <outputs>
10 <data format="interval" name="outputfile" /> 10 <data format="interval" name="outputfile" />
11 </outputs> 11 </outputs>
12 <tests>
13 <test>
14 <param name="inputSNPGff3File" value="targets.gff" ftype="gff3"/>
15 <param name="inputFasta" value="targets.fasta" ftype="fasta"/>
16 <output name="outputfile" file="find_caps_output.txt"/>
17 </test>
18 </tests>
12 <help> 19 <help>
13 .. class:: infomark 20 .. class:: infomark
14 21
15 **TIP** 22 **TIP**
16 23
30 37
31 **Example** 38 **Example**
32 39
33 40
34 41
35 *input GFF* 42 *input GFF3*
36 43
37 :: 44 ::
38 45
39 JR843866 gsmapper SNP 63 63 . . . ID=JR843866:gsmapperSNP:63;Reference_seq=T;Variant_seq=C;Total_reads=22;Variant_reads=20 46 JR843866 gsmapper SNP 63 63 . . . ID=JR843866:gsmapperSNP:63;Reference_seq=T;Variant_seq=C;Total_reads=22;Variant_reads=20
40 JR843866 gsmapper SNP 146 146 . . . ID=JR843866:gsmapperSNP:146;Reference_seq=T;Variant_seq=C;Total_reads=26;Variant_reads=10 47 JR843866 gsmapper SNP 146 146 . . . ID=JR843866:gsmapperSNP:146;Reference_seq=T;Variant_seq=C;Total_reads=26;Variant_reads=10