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comparison test-data/ipcress.out @ 5:b321e0517be3 draft

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author ben-warren
date Thu, 22 May 2014 20:30:19 -0400
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4:be070a68521e 5:b321e0517be3
1
2 Ipcress result
3 --------------
4 Experiment: k69_93535:SAMTOOLS:SNP:1147
5 Primers: A B
6 Target: k69_93535:filter(unmasked)
7 Matches: 20/20 23/23
8 Product: 83 bp (range 50-100)
9 Result type: forward
10
11 ...GGACAGGGAAGCTTCATAGG................................. # forward
12 ||||||||||||||||||||-->
13 5'-GGACAGGGAAGCTTCATAGG-3' 3'-CTCCTAAACTAGAAAGTCCAAAC-5' # primers
14 <--|||||||||||||||||||||||
15 ..............................CTCCTAAACTAGAAAGTCCAAAC... # revcomp
16 --
17 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 83 A 1088 0 B 1148 0 forward
18
19 Ipcress result
20 --------------
21 Experiment: k69_93535:SAMTOOLS:SNP:1147
22 Primers: A B
23 Target: k69_93535:filter(unmasked)
24 Matches: 21/21 21/21
25 Product: 86 bp (range 50-100)
26 Result type: forward
27
28 ...CTTTGAGTCTGAACGCATTTG............................... # forward
29 |||||||||||||||||||||-->
30 5'-CTTTGAGTCTGAACGCATTTG-3' 3'-CTTCTTTGCCCTCTACTTTGT-5' # primers
31 <--|||||||||||||||||||||
32 ...............................CTTCTTTGCCCTCTACTTTGT... # revcomp
33 --
34 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 86 A 1109 0 B 1174 0 forward
35
36 Ipcress result
37 --------------
38 Experiment: k69_93535:SAMTOOLS:SNP:1147
39 Primers: A B
40 Target: k69_93535:filter(unmasked)
41 Matches: 20/20 20/20
42 Product: 87 bp (range 50-100)
43 Result type: forward
44
45 ...TTTGAGTCTGAACGCATTTG.............................. # forward
46 ||||||||||||||||||||-->
47 5'-TTTGAGTCTGAACGCATTTG-3' 3'-CTTTGCCCTCTACTTTGTTC-5' # primers
48 <--||||||||||||||||||||
49 ..............................CTTTGCCCTCTACTTTGTTC... # revcomp
50 --
51 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 87 A 1110 0 B 1177 0 forward
52
53 Ipcress result
54 --------------
55 Experiment: k69_93535:SAMTOOLS:SNP:1147
56 Primers: A B
57 Target: k69_93535:filter(unmasked)
58 Matches: 21/21 21/21
59 Product: 89 bp (range 50-100)
60 Result type: forward
61
62 ...CTTTGAGTCTGAACGCATTTG............................... # forward
63 |||||||||||||||||||||-->
64 5'-CTTTGAGTCTGAACGCATTTG-3' 3'-CTTTGCCCTCTACTTTGTTCT-5' # primers
65 <--|||||||||||||||||||||
66 ...............................CTTTGCCCTCTACTTTGTTCT... # revcomp
67 --
68 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 89 A 1109 0 B 1177 0 forward
69
70 Ipcress result
71 --------------
72 Experiment: k69_93535:SAMTOOLS:SNP:1147
73 Primers: A B
74 Target: k69_93535:filter(unmasked)
75 Matches: 21/21 21/21
76 Product: 93 bp (range 50-100)
77 Result type: forward
78
79 ...CTTTGAGTCTGAACGCATTTG............................... # forward
80 |||||||||||||||||||||-->
81 5'-CTTTGAGTCTGAACGCATTTG-3' 3'-GCCCTCTACTTTGTTCTAAAC-5' # primers
82 <--|||||||||||||||||||||
83 ...............................GCCCTCTACTTTGTTCTAAAC... # revcomp
84 --
85 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 93 A 1109 0 B 1181 0 forward
86
87 Ipcress result
88 --------------
89 Experiment: k69_93535:SAMTOOLS:SNP:1336
90 Primers: A B
91 Target: k69_93535:filter(unmasked)
92 Matches: 20/20 22/22
93 Product: 82 bp (range 50-100)
94 Result type: forward
95
96 ...TTAGAAGGAACGCGAGAAGG................................ # forward
97 ||||||||||||||||||||-->
98 5'-TTAGAAGGAACGCGAGAAGG-3' 3'-GAATGCGGATCAAACCAACAAC-5' # primers
99 <--||||||||||||||||||||||
100 ..............................GAATGCGGATCAAACCAACAAC... # revcomp
101 --
102 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 82 A 1297 0 B 1357 0 forward
103
104 Ipcress result
105 --------------
106 Experiment: k69_93535:SAMTOOLS:SNP:1336
107 Primers: A B
108 Target: k69_93535:filter(unmasked)
109 Matches: 20/20 20/20
110 Product: 85 bp (range 50-100)
111 Result type: forward
112
113 ...TTTAGAAGGAACGCGAGAAG.............................. # forward
114 ||||||||||||||||||||-->
115 5'-TTTAGAAGGAACGCGAGAAG-3' 3'-GCGGATCAAACCAACAACAA-5' # primers
116 <--||||||||||||||||||||
117 ..............................GCGGATCAAACCAACAACAA... # revcomp
118 --
119 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 85 A 1296 0 B 1361 0 forward
120
121 Ipcress result
122 --------------
123 Experiment: k69_93535:SAMTOOLS:SNP:1336
124 Primers: A B
125 Target: k69_93535:filter(unmasked)
126 Matches: 21/21 20/20
127 Product: 86 bp (range 50-100)
128 Result type: forward
129
130 ...GTTTAGAAGGAACGCGAGAAG.............................. # forward
131 |||||||||||||||||||||-->
132 5'-GTTTAGAAGGAACGCGAGAAG-3' 3'-GCGGATCAAACCAACAACAA-5' # primers
133 <--||||||||||||||||||||
134 ...............................GCGGATCAAACCAACAACAA... # revcomp
135 --
136 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 86 A 1295 0 B 1361 0 forward
137
138 Ipcress result
139 --------------
140 Experiment: k69_93535:SAMTOOLS:SNP:1336
141 Primers: A B
142 Target: k69_93535:filter(unmasked)
143 Matches: 20/20 22/22
144 Product: 87 bp (range 50-100)
145 Result type: forward
146
147 ...TTAGAAGGAACGCGAGAAGG................................ # forward
148 ||||||||||||||||||||-->
149 5'-TTAGAAGGAACGCGAGAAGG-3' 3'-CGGATCAAACCAACAACAACTC-5' # primers
150 <--||||||||||||||||||||||
151 ..............................CGGATCAAACCAACAACAACTC... # revcomp
152 --
153 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 87 A 1297 0 B 1362 0 forward
154
155 Ipcress result
156 --------------
157 Experiment: k69_93535:SAMTOOLS:SNP:1336
158 Primers: A B
159 Target: k69_93535:filter(unmasked)
160 Matches: 20/20 22/22
161 Product: 88 bp (range 50-100)
162 Result type: forward
163
164 ...TTAGAAGGAACGCGAGAAGG................................ # forward
165 ||||||||||||||||||||-->
166 5'-TTAGAAGGAACGCGAGAAGG-3' 3'-GGATCAAACCAACAACAACTCG-5' # primers
167 <--||||||||||||||||||||||
168 ..............................GGATCAAACCAACAACAACTCG... # revcomp
169 --
170 ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 88 A 1297 0 B 1363 0 forward
171
172 Ipcress result
173 --------------
174 Experiment: k69_98089:SAMTOOLS:SNP:30
175 Primers: A B
176 Target: k69_98089:filter(unmasked)
177 Matches: 25/25 19/19
178 Product: 88 bp (range 50-100)
179 Result type: forward
180
181 ...CAAATCCAAACATGTTATCTTCTTC............................. # forward
182 |||||||||||||||||||||||||-->
183 5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-GCGAGTTGCAGTCTAGTAG-5' # primers
184 <--|||||||||||||||||||
185 ...................................GCGAGTTGCAGTCTAGTAG... # revcomp
186 --
187 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 88 A 1 0 B 70 0 forward
188
189 Ipcress result
190 --------------
191 Experiment: k69_98089:SAMTOOLS:SNP:30
192 Primers: A B
193 Target: k69_98089:filter(unmasked)
194 Matches: 25/25 20/20
195 Product: 90 bp (range 50-100)
196 Result type: forward
197
198 ...CAAATCCAAACATGTTATCTTCTTC.............................. # forward
199 |||||||||||||||||||||||||-->
200 5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-CGAGTTGCAGTCTAGTAGTT-5' # primers
201 <--||||||||||||||||||||
202 ...................................CGAGTTGCAGTCTAGTAGTT... # revcomp
203 --
204 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 90 A 1 0 B 71 0 forward
205
206 Ipcress result
207 --------------
208 Experiment: k69_98089:SAMTOOLS:SNP:30
209 Primers: A B
210 Target: k69_98089:filter(unmasked)
211 Matches: 25/25 21/21
212 Product: 91 bp (range 50-100)
213 Result type: forward
214
215 ...CAAATCCAAACATGTTATCTTCTTC............................... # forward
216 |||||||||||||||||||||||||-->
217 5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-CGAGTTGCAGTCTAGTAGTTG-5' # primers
218 <--|||||||||||||||||||||
219 ...................................CGAGTTGCAGTCTAGTAGTTG... # revcomp
220 --
221 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 91 A 1 0 B 71 0 forward
222
223 Ipcress result
224 --------------
225 Experiment: k69_98089:SAMTOOLS:SNP:30
226 Primers: A B
227 Target: k69_98089:filter(unmasked)
228 Matches: 25/25 20/20
229 Product: 96 bp (range 50-100)
230 Result type: forward
231
232 ...CAAATCCAAACATGTTATCTTCTTC.............................. # forward
233 |||||||||||||||||||||||||-->
234 5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-GCAGTCTAGTAGTTGTGCTT-5' # primers
235 <--||||||||||||||||||||
236 ...................................GCAGTCTAGTAGTTGTGCTT... # revcomp
237 --
238 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 96 A 1 0 B 77 0 forward
239
240 Ipcress result
241 --------------
242 Experiment: k69_98089:SAMTOOLS:SNP:30
243 Primers: A B
244 Target: k69_98089:filter(unmasked)
245 Matches: 25/25 21/21
246 Product: 97 bp (range 50-100)
247 Result type: forward
248
249 ...CAAATCCAAACATGTTATCTTCTTC............................... # forward
250 |||||||||||||||||||||||||-->
251 5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-GCAGTCTAGTAGTTGTGCTTG-5' # primers
252 <--|||||||||||||||||||||
253 ...................................GCAGTCTAGTAGTTGTGCTTG... # revcomp
254 --
255 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 97 A 1 0 B 77 0 forward
256
257 Ipcress result
258 --------------
259 Experiment: k69_98089:SAMTOOLS:SNP:550
260 Primers: A B
261 Target: k69_98089:filter(unmasked)
262 Matches: 22/22 24/24
263 Product: 88 bp (range 50-100)
264 Result type: forward
265
266 ...TGAATTGATACTGAAATTCGGG.................................. # forward
267 ||||||||||||||||||||||-->
268 5'-TGAATTGATACTGAAATTCGGG-3' 3'-CTAACACCTTTGAAAGTACATACG-5' # primers
269 <--||||||||||||||||||||||||
270 ................................CTAACACCTTTGAAAGTACATACG... # revcomp
271 --
272 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 88 A 499 0 B 563 0 forward
273
274 Ipcress result
275 --------------
276 Experiment: k69_98089:SAMTOOLS:SNP:550
277 Primers: A B
278 Target: k69_98089:filter(unmasked)
279 Matches: 22/22 24/24
280 Product: 77 bp (range 50-100)
281 Result type: forward
282
283 ...TGAAATTCGGGAAGACTGAAAG.................................. # forward
284 ||||||||||||||||||||||-->
285 5'-TGAAATTCGGGAAGACTGAAAG-3' 3'-CTAACACCTTTGAAAGTACATACG-5' # primers
286 <--||||||||||||||||||||||||
287 ................................CTAACACCTTTGAAAGTACATACG... # revcomp
288 --
289 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 77 A 510 0 B 563 0 forward
290
291 Ipcress result
292 --------------
293 Experiment: k69_98089:SAMTOOLS:SNP:550
294 Primers: A B
295 Target: k69_98089:filter(unmasked)
296 Matches: 19/19 25/25
297 Product: 75 bp (range 50-100)
298 Result type: forward
299
300 ...CGGGAAGACTGAAAGAACG................................... # forward
301 |||||||||||||||||||-->
302 5'-CGGGAAGACTGAAAGAACG-3' 3'-CACCTTTGAAAGTACATACGATAGA-5' # primers
303 <--|||||||||||||||||||||||||
304 .............................CACCTTTGAAAGTACATACGATAGA... # revcomp
305 --
306 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 75 A 517 0 B 567 0 forward
307
308 Ipcress result
309 --------------
310 Experiment: k69_98089:SAMTOOLS:SNP:550
311 Primers: A B
312 Target: k69_98089:filter(unmasked)
313 Matches: 21/21 25/25
314 Product: 81 bp (range 50-100)
315 Result type: forward
316
317 ...GAAATTCGGGAAGACTGAAAG................................... # forward
318 |||||||||||||||||||||-->
319 5'-GAAATTCGGGAAGACTGAAAG-3' 3'-CACCTTTGAAAGTACATACGATAGA-5' # primers
320 <--|||||||||||||||||||||||||
321 ...............................CACCTTTGAAAGTACATACGATAGA... # revcomp
322 --
323 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 81 A 511 0 B 567 0 forward
324
325 Ipcress result
326 --------------
327 Experiment: k69_98089:SAMTOOLS:SNP:550
328 Primers: A B
329 Target: k69_98089:filter(unmasked)
330 Matches: 22/22 25/25
331 Product: 79 bp (range 50-100)
332 Result type: forward
333
334 ...AATTCGGGAAGACTGAAAGAAC................................... # forward
335 ||||||||||||||||||||||-->
336 5'-AATTCGGGAAGACTGAAAGAAC-3' 3'-CACCTTTGAAAGTACATACGATAGA-5' # primers
337 <--|||||||||||||||||||||||||
338 ................................CACCTTTGAAAGTACATACGATAGA... # revcomp
339 --
340 ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 79 A 513 0 B 567 0 forward
341 -- completed ipcress analysis