Mercurial > repos > john-mccallum > pcr_markers

comparison vcf_gff.xml @ 5:b321e0517be3 draft

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author ben-warren
date Thu, 22 May 2014 20:30:19 -0400
parents a0689dc29b7f
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4:be070a68521e 5:b321e0517be3
6 <param format="vcf" name="inputVcf" type="data" label="vcf file containing SNP data"/> 6 <param format="vcf" name="inputVcf" type="data" label="vcf file containing SNP data"/>
7 </inputs> 7 </inputs>
8 <outputs> 8 <outputs>
9 <data format="gff3" name="outputfile" /> 9 <data format="gff3" name="outputfile" />
10 </outputs> 10 </outputs>
11 <tests>
12 <test>
13 <param name="inputVcf" value="mpileup_out.vcf" ftype="vcf"/>
14 <output name="outputfile" file="mpileup_vcf_to_gff_output.gff"/>
15 </test>
16 <test>
17 <param name="inputVcf" value="freebayes_out.vcf" ftype="vcf"/>
18 <output name="outputfile" file="freebayes_vcf_to_gff_output.gff"/>
19 </test>
20 </tests>
11 <help> 21 <help>
12 22
13 ** Convert vcf to gff3** 23 ** Convert vcf to gff3**
14 24
15 This tool takes vcf output from Samtools mpileup and converts to gff3 format. 25 This tool takes vcf output from Samtools mpileup and converts to gff3 format.