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diff test-data/ipcress.out @ 5:b321e0517be3 draft

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author ben-warren
date Thu, 22 May 2014 20:30:19 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/ipcress.out	Thu May 22 20:30:19 2014 -0400
@@ -0,0 +1,341 @@
+
+Ipcress result
+--------------
+ Experiment: k69_93535:SAMTOOLS:SNP:1147
+    Primers: A B
+     Target: k69_93535:filter(unmasked)
+    Matches: 20/20 23/23
+    Product: 83 bp (range 50-100)
+Result type: forward
+
+...GGACAGGGAAGCTTCATAGG................................. # forward
+   ||||||||||||||||||||-->
+5'-GGACAGGGAAGCTTCATAGG-3' 3'-CTCCTAAACTAGAAAGTCCAAAC-5' # primers
+                           <--|||||||||||||||||||||||
+..............................CTCCTAAACTAGAAAGTCCAAAC... # revcomp
+--
+ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 83 A 1088 0 B 1148 0 forward
+
+Ipcress result
+--------------
+ Experiment: k69_93535:SAMTOOLS:SNP:1147
+    Primers: A B
+     Target: k69_93535:filter(unmasked)
+    Matches: 21/21 21/21
+    Product: 86 bp (range 50-100)
+Result type: forward
+
+...CTTTGAGTCTGAACGCATTTG............................... # forward
+   |||||||||||||||||||||-->
+5'-CTTTGAGTCTGAACGCATTTG-3' 3'-CTTCTTTGCCCTCTACTTTGT-5' # primers
+                            <--|||||||||||||||||||||
+...............................CTTCTTTGCCCTCTACTTTGT... # revcomp
+--
+ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 86 A 1109 0 B 1174 0 forward
+
+Ipcress result
+--------------
+ Experiment: k69_93535:SAMTOOLS:SNP:1147
+    Primers: A B
+     Target: k69_93535:filter(unmasked)
+    Matches: 20/20 20/20
+    Product: 87 bp (range 50-100)
+Result type: forward
+
+...TTTGAGTCTGAACGCATTTG.............................. # forward
+   ||||||||||||||||||||-->
+5'-TTTGAGTCTGAACGCATTTG-3' 3'-CTTTGCCCTCTACTTTGTTC-5' # primers
+                           <--||||||||||||||||||||
+..............................CTTTGCCCTCTACTTTGTTC... # revcomp
+--
+ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 87 A 1110 0 B 1177 0 forward
+
+Ipcress result
+--------------
+ Experiment: k69_93535:SAMTOOLS:SNP:1147
+    Primers: A B
+     Target: k69_93535:filter(unmasked)
+    Matches: 21/21 21/21
+    Product: 89 bp (range 50-100)
+Result type: forward
+
+...CTTTGAGTCTGAACGCATTTG............................... # forward
+   |||||||||||||||||||||-->
+5'-CTTTGAGTCTGAACGCATTTG-3' 3'-CTTTGCCCTCTACTTTGTTCT-5' # primers
+                            <--|||||||||||||||||||||
+...............................CTTTGCCCTCTACTTTGTTCT... # revcomp
+--
+ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 89 A 1109 0 B 1177 0 forward
+
+Ipcress result
+--------------
+ Experiment: k69_93535:SAMTOOLS:SNP:1147
+    Primers: A B
+     Target: k69_93535:filter(unmasked)
+    Matches: 21/21 21/21
+    Product: 93 bp (range 50-100)
+Result type: forward
+
+...CTTTGAGTCTGAACGCATTTG............................... # forward
+   |||||||||||||||||||||-->
+5'-CTTTGAGTCTGAACGCATTTG-3' 3'-GCCCTCTACTTTGTTCTAAAC-5' # primers
+                            <--|||||||||||||||||||||
+...............................GCCCTCTACTTTGTTCTAAAC... # revcomp
+--
+ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1147 93 A 1109 0 B 1181 0 forward
+
+Ipcress result
+--------------
+ Experiment: k69_93535:SAMTOOLS:SNP:1336
+    Primers: A B
+     Target: k69_93535:filter(unmasked)
+    Matches: 20/20 22/22
+    Product: 82 bp (range 50-100)
+Result type: forward
+
+...TTAGAAGGAACGCGAGAAGG................................ # forward
+   ||||||||||||||||||||-->
+5'-TTAGAAGGAACGCGAGAAGG-3' 3'-GAATGCGGATCAAACCAACAAC-5' # primers
+                           <--||||||||||||||||||||||
+..............................GAATGCGGATCAAACCAACAAC... # revcomp
+--
+ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 82 A 1297 0 B 1357 0 forward
+
+Ipcress result
+--------------
+ Experiment: k69_93535:SAMTOOLS:SNP:1336
+    Primers: A B
+     Target: k69_93535:filter(unmasked)
+    Matches: 20/20 20/20
+    Product: 85 bp (range 50-100)
+Result type: forward
+
+...TTTAGAAGGAACGCGAGAAG.............................. # forward
+   ||||||||||||||||||||-->
+5'-TTTAGAAGGAACGCGAGAAG-3' 3'-GCGGATCAAACCAACAACAA-5' # primers
+                           <--||||||||||||||||||||
+..............................GCGGATCAAACCAACAACAA... # revcomp
+--
+ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 85 A 1296 0 B 1361 0 forward
+
+Ipcress result
+--------------
+ Experiment: k69_93535:SAMTOOLS:SNP:1336
+    Primers: A B
+     Target: k69_93535:filter(unmasked)
+    Matches: 21/21 20/20
+    Product: 86 bp (range 50-100)
+Result type: forward
+
+...GTTTAGAAGGAACGCGAGAAG.............................. # forward
+   |||||||||||||||||||||-->
+5'-GTTTAGAAGGAACGCGAGAAG-3' 3'-GCGGATCAAACCAACAACAA-5' # primers
+                            <--||||||||||||||||||||
+...............................GCGGATCAAACCAACAACAA... # revcomp
+--
+ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 86 A 1295 0 B 1361 0 forward
+
+Ipcress result
+--------------
+ Experiment: k69_93535:SAMTOOLS:SNP:1336
+    Primers: A B
+     Target: k69_93535:filter(unmasked)
+    Matches: 20/20 22/22
+    Product: 87 bp (range 50-100)
+Result type: forward
+
+...TTAGAAGGAACGCGAGAAGG................................ # forward
+   ||||||||||||||||||||-->
+5'-TTAGAAGGAACGCGAGAAGG-3' 3'-CGGATCAAACCAACAACAACTC-5' # primers
+                           <--||||||||||||||||||||||
+..............................CGGATCAAACCAACAACAACTC... # revcomp
+--
+ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 87 A 1297 0 B 1362 0 forward
+
+Ipcress result
+--------------
+ Experiment: k69_93535:SAMTOOLS:SNP:1336
+    Primers: A B
+     Target: k69_93535:filter(unmasked)
+    Matches: 20/20 22/22
+    Product: 88 bp (range 50-100)
+Result type: forward
+
+...TTAGAAGGAACGCGAGAAGG................................ # forward
+   ||||||||||||||||||||-->
+5'-TTAGAAGGAACGCGAGAAGG-3' 3'-GGATCAAACCAACAACAACTCG-5' # primers
+                           <--||||||||||||||||||||||
+..............................GGATCAAACCAACAACAACTCG... # revcomp
+--
+ipcress: k69_93535:filter(unmasked) k69_93535:SAMTOOLS:SNP:1336 88 A 1297 0 B 1363 0 forward
+
+Ipcress result
+--------------
+ Experiment: k69_98089:SAMTOOLS:SNP:30
+    Primers: A B
+     Target: k69_98089:filter(unmasked)
+    Matches: 25/25 19/19
+    Product: 88 bp (range 50-100)
+Result type: forward
+
+...CAAATCCAAACATGTTATCTTCTTC............................. # forward
+   |||||||||||||||||||||||||-->
+5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-GCGAGTTGCAGTCTAGTAG-5' # primers
+                                <--|||||||||||||||||||
+...................................GCGAGTTGCAGTCTAGTAG... # revcomp
+--
+ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 88 A 1 0 B 70 0 forward
+
+Ipcress result
+--------------
+ Experiment: k69_98089:SAMTOOLS:SNP:30
+    Primers: A B
+     Target: k69_98089:filter(unmasked)
+    Matches: 25/25 20/20
+    Product: 90 bp (range 50-100)
+Result type: forward
+
+...CAAATCCAAACATGTTATCTTCTTC.............................. # forward
+   |||||||||||||||||||||||||-->
+5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-CGAGTTGCAGTCTAGTAGTT-5' # primers
+                                <--||||||||||||||||||||
+...................................CGAGTTGCAGTCTAGTAGTT... # revcomp
+--
+ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 90 A 1 0 B 71 0 forward
+
+Ipcress result
+--------------
+ Experiment: k69_98089:SAMTOOLS:SNP:30
+    Primers: A B
+     Target: k69_98089:filter(unmasked)
+    Matches: 25/25 21/21
+    Product: 91 bp (range 50-100)
+Result type: forward
+
+...CAAATCCAAACATGTTATCTTCTTC............................... # forward
+   |||||||||||||||||||||||||-->
+5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-CGAGTTGCAGTCTAGTAGTTG-5' # primers
+                                <--|||||||||||||||||||||
+...................................CGAGTTGCAGTCTAGTAGTTG... # revcomp
+--
+ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 91 A 1 0 B 71 0 forward
+
+Ipcress result
+--------------
+ Experiment: k69_98089:SAMTOOLS:SNP:30
+    Primers: A B
+     Target: k69_98089:filter(unmasked)
+    Matches: 25/25 20/20
+    Product: 96 bp (range 50-100)
+Result type: forward
+
+...CAAATCCAAACATGTTATCTTCTTC.............................. # forward
+   |||||||||||||||||||||||||-->
+5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-GCAGTCTAGTAGTTGTGCTT-5' # primers
+                                <--||||||||||||||||||||
+...................................GCAGTCTAGTAGTTGTGCTT... # revcomp
+--
+ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 96 A 1 0 B 77 0 forward
+
+Ipcress result
+--------------
+ Experiment: k69_98089:SAMTOOLS:SNP:30
+    Primers: A B
+     Target: k69_98089:filter(unmasked)
+    Matches: 25/25 21/21
+    Product: 97 bp (range 50-100)
+Result type: forward
+
+...CAAATCCAAACATGTTATCTTCTTC............................... # forward
+   |||||||||||||||||||||||||-->
+5'-CAAATCCAAACATGTTATCTTCTTC-3' 3'-GCAGTCTAGTAGTTGTGCTTG-5' # primers
+                                <--|||||||||||||||||||||
+...................................GCAGTCTAGTAGTTGTGCTTG... # revcomp
+--
+ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:30 97 A 1 0 B 77 0 forward
+
+Ipcress result
+--------------
+ Experiment: k69_98089:SAMTOOLS:SNP:550
+    Primers: A B
+     Target: k69_98089:filter(unmasked)
+    Matches: 22/22 24/24
+    Product: 88 bp (range 50-100)
+Result type: forward
+
+...TGAATTGATACTGAAATTCGGG.................................. # forward
+   ||||||||||||||||||||||-->
+5'-TGAATTGATACTGAAATTCGGG-3' 3'-CTAACACCTTTGAAAGTACATACG-5' # primers
+                             <--||||||||||||||||||||||||
+................................CTAACACCTTTGAAAGTACATACG... # revcomp
+--
+ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 88 A 499 0 B 563 0 forward
+
+Ipcress result
+--------------
+ Experiment: k69_98089:SAMTOOLS:SNP:550
+    Primers: A B
+     Target: k69_98089:filter(unmasked)
+    Matches: 22/22 24/24
+    Product: 77 bp (range 50-100)
+Result type: forward
+
+...TGAAATTCGGGAAGACTGAAAG.................................. # forward
+   ||||||||||||||||||||||-->
+5'-TGAAATTCGGGAAGACTGAAAG-3' 3'-CTAACACCTTTGAAAGTACATACG-5' # primers
+                             <--||||||||||||||||||||||||
+................................CTAACACCTTTGAAAGTACATACG... # revcomp
+--
+ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 77 A 510 0 B 563 0 forward
+
+Ipcress result
+--------------
+ Experiment: k69_98089:SAMTOOLS:SNP:550
+    Primers: A B
+     Target: k69_98089:filter(unmasked)
+    Matches: 19/19 25/25
+    Product: 75 bp (range 50-100)
+Result type: forward
+
+...CGGGAAGACTGAAAGAACG................................... # forward
+   |||||||||||||||||||-->
+5'-CGGGAAGACTGAAAGAACG-3' 3'-CACCTTTGAAAGTACATACGATAGA-5' # primers
+                          <--|||||||||||||||||||||||||
+.............................CACCTTTGAAAGTACATACGATAGA... # revcomp
+--
+ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 75 A 517 0 B 567 0 forward
+
+Ipcress result
+--------------
+ Experiment: k69_98089:SAMTOOLS:SNP:550
+    Primers: A B
+     Target: k69_98089:filter(unmasked)
+    Matches: 21/21 25/25
+    Product: 81 bp (range 50-100)
+Result type: forward
+
+...GAAATTCGGGAAGACTGAAAG................................... # forward
+   |||||||||||||||||||||-->
+5'-GAAATTCGGGAAGACTGAAAG-3' 3'-CACCTTTGAAAGTACATACGATAGA-5' # primers
+                            <--|||||||||||||||||||||||||
+...............................CACCTTTGAAAGTACATACGATAGA... # revcomp
+--
+ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 81 A 511 0 B 567 0 forward
+
+Ipcress result
+--------------
+ Experiment: k69_98089:SAMTOOLS:SNP:550
+    Primers: A B
+     Target: k69_98089:filter(unmasked)
+    Matches: 22/22 25/25
+    Product: 79 bp (range 50-100)
+Result type: forward
+
+...AATTCGGGAAGACTGAAAGAAC................................... # forward
+   ||||||||||||||||||||||-->
+5'-AATTCGGGAAGACTGAAAGAAC-3' 3'-CACCTTTGAAAGTACATACGATAGA-5' # primers
+                             <--|||||||||||||||||||||||||
+................................CACCTTTGAAAGTACATACGATAGA... # revcomp
+--
+ipcress: k69_98089:filter(unmasked) k69_98089:SAMTOOLS:SNP:550 79 A 513 0 B 567 0 forward
+-- completed ipcress analysis