Mercurial > repos > john-mccallum > pcr_markers
diff test-data/mpileup_vcf_to_gff_output.gff @ 5:b321e0517be3 draft
Uploaded
| author | ben-warren |
|---|---|
| date | Thu, 22 May 2014 20:30:19 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mpileup_vcf_to_gff_output.gff Thu May 22 20:30:19 2014 -0400 @@ -0,0 +1,436 @@ +#gff-version 3 +Chr1 SAMTOOLS SNP 14086 14086 31.5 . . ID=Chr1:SNP:14086;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14087 14087 26 . . ID=Chr1:SNP:14087;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14088 14088 31.5 . . ID=Chr1:SNP:14088;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14089 14089 31.5 . . ID=Chr1:SNP:14089;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14090 14090 31.5 . . ID=Chr1:SNP:14090;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14091 14091 26 . . ID=Chr1:SNP:14091;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14092 14092 26 . . ID=Chr1:SNP:14092;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14093 14093 31.5 . . ID=Chr1:SNP:14093;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14094 14094 31.5 . . ID=Chr1:SNP:14094;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14095 14095 31.5 . . ID=Chr1:SNP:14095;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14096 14096 31.5 . . ID=Chr1:SNP:14096;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14097 14097 31.5 . . ID=Chr1:SNP:14097;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14098 14098 31.5 . . ID=Chr1:SNP:14098;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14099 14099 31.5 . . ID=Chr1:SNP:14099;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14100 14100 31.5 . . ID=Chr1:SNP:14100;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14101 14101 31.5 . . ID=Chr1:SNP:14101;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14102 14102 31.5 . . ID=Chr1:SNP:14102;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14103 14103 26 . . ID=Chr1:SNP:14103;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14104 14104 31.5 . . ID=Chr1:SNP:14104;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14105 14105 26 . . ID=Chr1:SNP:14105;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14106 14106 31.5 . . ID=Chr1:SNP:14106;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14107 14107 31.5 . . ID=Chr1:SNP:14107;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14108 14108 31.5 . . ID=Chr1:SNP:14108;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14109 14109 31.5 . . ID=Chr1:SNP:14109;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14110 14110 31.5 . . ID=Chr1:SNP:14110;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14111 14111 31.5 . . ID=Chr1:SNP:14111;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14112 14112 31.5 . . ID=Chr1:SNP:14112;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14113 14113 31.5 . . ID=Chr1:SNP:14113;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14114 14114 31.5 . . ID=Chr1:SNP:14114;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14115 14115 31.5 . . ID=Chr1:SNP:14115;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14116 14116 31.5 . . ID=Chr1:SNP:14116;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14117 14117 31.5 . . ID=Chr1:SNP:14117;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14118 14118 31.5 . . ID=Chr1:SNP:14118;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14119 14119 26 . . ID=Chr1:SNP:14119;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14120 14120 31.5 . . ID=Chr1:SNP:14120;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14121 14121 31.5 . . ID=Chr1:SNP:14121;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14122 14122 31.5 . . ID=Chr1:SNP:14122;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14123 14123 31.5 . . ID=Chr1:SNP:14123;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14124 14124 31.5 . . ID=Chr1:SNP:14124;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14125 14125 31.5 . . ID=Chr1:SNP:14125;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14126 14126 26 . . ID=Chr1:SNP:14126;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14127 14127 31.5 . . ID=Chr1:SNP:14127;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14128 14128 31.5 . . ID=Chr1:SNP:14128;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14129 14129 31.5 . . ID=Chr1:SNP:14129;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14130 14130 31.5 . . ID=Chr1:SNP:14130;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14131 14131 26 . . ID=Chr1:SNP:14131;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14132 14132 31.5 . . ID=Chr1:SNP:14132;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14133 14133 26 . . ID=Chr1:SNP:14133;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14134 14134 31.5 . . ID=Chr1:SNP:14134;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14135 14135 31.5 . . ID=Chr1:SNP:14135;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14136 14136 26 . . ID=Chr1:SNP:14136;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14137 14137 31.5 . . ID=Chr1:SNP:14137;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14138 14138 31.5 . . ID=Chr1:SNP:14138;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14139 14139 31.5 . . ID=Chr1:SNP:14139;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14140 14140 31.5 . . ID=Chr1:SNP:14140;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14141 14141 26 . . ID=Chr1:SNP:14141;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14142 14142 31.5 . . ID=Chr1:SNP:14142;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14143 14143 26 . . ID=Chr1:SNP:14143;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14144 14144 31.5 . . ID=Chr1:SNP:14144;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14145 14145 31.5 . . ID=Chr1:SNP:14145;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14146 14146 31.5 . . ID=Chr1:SNP:14146;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14147 14147 31.5 . . ID=Chr1:SNP:14147;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14148 14148 31.5 . . ID=Chr1:SNP:14148;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14149 14149 31.5 . . ID=Chr1:SNP:14149;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14150 14150 31.5 . . ID=Chr1:SNP:14150;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14151 14151 31.5 . . ID=Chr1:SNP:14151;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14152 14152 31.5 . . ID=Chr1:SNP:14152;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14153 14153 31.5 . . ID=Chr1:SNP:14153;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14154 14154 31.5 . . ID=Chr1:SNP:14154;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14155 14155 31.5 . . ID=Chr1:SNP:14155;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14156 14156 31.5 . . ID=Chr1:SNP:14156;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14157 14157 31.5 . . ID=Chr1:SNP:14157;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14158 14158 31.5 . . ID=Chr1:SNP:14158;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14159 14159 26 . . ID=Chr1:SNP:14159;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14160 14160 31.5 . . ID=Chr1:SNP:14160;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14161 14161 31.5 . . ID=Chr1:SNP:14161;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14162 14162 31.5 . . ID=Chr1:SNP:14162;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14163 14163 31.5 . . ID=Chr1:SNP:14163;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14164 14164 31.5 . . ID=Chr1:SNP:14164;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14165 14165 31.5 . . ID=Chr1:SNP:14165;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14166 14166 31.5 . . ID=Chr1:SNP:14166;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14167 14167 26 . . ID=Chr1:SNP:14167;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14168 14168 31.5 . . ID=Chr1:SNP:14168;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14169 14169 31.5 . . ID=Chr1:SNP:14169;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14170 14170 31.5 . . ID=Chr1:SNP:14170;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14171 14171 31.5 . . ID=Chr1:SNP:14171;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14172 14172 31.5 . . ID=Chr1:SNP:14172;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14173 14173 31.5 . . ID=Chr1:SNP:14173;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14174 14174 31.5 . . ID=Chr1:SNP:14174;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14175 14175 31.5 . . ID=Chr1:SNP:14175;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14176 14176 31.5 . . ID=Chr1:SNP:14176;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14177 14177 31.5 . . ID=Chr1:SNP:14177;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14178 14178 31.5 . . ID=Chr1:SNP:14178;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14179 14179 31.5 . . ID=Chr1:SNP:14179;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14180 14180 31.5 . . ID=Chr1:SNP:14180;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14181 14181 31.5 . . ID=Chr1:SNP:14181;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14182 14182 26 . . ID=Chr1:SNP:14182;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14183 14183 31.5 . . ID=Chr1:SNP:14183;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14184 14184 31.5 . . ID=Chr1:SNP:14184;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14185 14185 31.5 . . ID=Chr1:SNP:14185;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14230 14230 26 . . ID=Chr1:SNP:14230;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14231 14231 31.5 . . ID=Chr1:SNP:14231;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14232 14232 31.5 . . ID=Chr1:SNP:14232;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14233 14233 31.5 . . ID=Chr1:SNP:14233;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14234 14234 31.5 . . ID=Chr1:SNP:14234;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14235 14235 31.5 . . ID=Chr1:SNP:14235;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14236 14236 31.5 . . ID=Chr1:SNP:14236;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14237 14237 31.5 . . ID=Chr1:SNP:14237;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14238 14238 31.5 . . ID=Chr1:SNP:14238;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14239 14239 31.5 . . ID=Chr1:SNP:14239;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14240 14240 26 . . ID=Chr1:SNP:14240;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14241 14241 31.5 . . ID=Chr1:SNP:14241;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14242 14242 31.5 . . ID=Chr1:SNP:14242;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14243 14243 31.5 . . ID=Chr1:SNP:14243;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14244 14244 31.5 . . ID=Chr1:SNP:14244;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14245 14245 31.5 . . ID=Chr1:SNP:14245;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14246 14246 31.5 . . ID=Chr1:SNP:14246;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14247 14247 26 . . ID=Chr1:SNP:14247;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14248 14248 31.5 . . ID=Chr1:SNP:14248;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14249 14249 31.5 . . ID=Chr1:SNP:14249;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14250 14250 31.5 . . ID=Chr1:SNP:14250;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14251 14251 31.5 . . ID=Chr1:SNP:14251;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14252 14252 31.5 . . ID=Chr1:SNP:14252;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14253 14253 31.5 . . ID=Chr1:SNP:14253;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14254 14254 31.5 . . ID=Chr1:SNP:14254;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14255 14255 31.5 . . ID=Chr1:SNP:14255;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14256 14256 26 . . ID=Chr1:SNP:14256;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14257 14257 31.5 . . ID=Chr1:SNP:14257;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14258 14258 31.5 . . ID=Chr1:SNP:14258;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14259 14259 31.5 . . ID=Chr1:SNP:14259;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14260 14260 31.5 . . ID=Chr1:SNP:14260;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14261 14261 31.5 . . ID=Chr1:SNP:14261;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14262 14262 26 . . ID=Chr1:SNP:14262;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14263 14263 26 . . ID=Chr1:SNP:14263;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14264 14264 31.5 . . ID=Chr1:SNP:14264;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14265 14265 31.5 . . ID=Chr1:SNP:14265;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14266 14266 31.5 . . ID=Chr1:SNP:14266;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14267 14267 31.5 . . ID=Chr1:SNP:14267;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14268 14268 31.5 . . ID=Chr1:SNP:14268;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14269 14269 31.5 . . ID=Chr1:SNP:14269;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14270 14270 31.5 . . ID=Chr1:SNP:14270;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14271 14271 31.5 . . ID=Chr1:SNP:14271;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14272 14272 31.5 . . ID=Chr1:SNP:14272;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14273 14273 31.5 . . ID=Chr1:SNP:14273;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14274 14274 31.5 . . ID=Chr1:SNP:14274;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14275 14275 31.5 . . ID=Chr1:SNP:14275;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14276 14276 31.5 . . ID=Chr1:SNP:14276;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14277 14277 31.5 . . ID=Chr1:SNP:14277;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14278 14278 31.5 . . ID=Chr1:SNP:14278;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14279 14279 31.5 . . ID=Chr1:SNP:14279;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14280 14280 31.5 . . ID=Chr1:SNP:14280;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14281 14281 31.5 . . ID=Chr1:SNP:14281;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14282 14282 31.5 . . ID=Chr1:SNP:14282;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14283 14283 31.5 . . ID=Chr1:SNP:14283;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14284 14284 31.5 . . ID=Chr1:SNP:14284;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14285 14285 31.5 . . ID=Chr1:SNP:14285;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14286 14286 31.5 . . ID=Chr1:SNP:14286;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14287 14287 31.5 . . ID=Chr1:SNP:14287;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14288 14288 31.5 . . ID=Chr1:SNP:14288;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14289 14289 31.5 . . ID=Chr1:SNP:14289;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14290 14290 31.5 . . ID=Chr1:SNP:14290;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14291 14291 31.5 . . ID=Chr1:SNP:14291;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14292 14292 26 . . ID=Chr1:SNP:14292;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14293 14293 31.5 . . ID=Chr1:SNP:14293;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14294 14294 31.5 . . ID=Chr1:SNP:14294;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14295 14295 26 . . ID=Chr1:SNP:14295;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14296 14296 31.5 . . ID=Chr1:SNP:14296;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14297 14297 31.5 . . ID=Chr1:SNP:14297;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14298 14298 31.5 . . ID=Chr1:SNP:14298;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14299 14299 31.5 . . ID=Chr1:SNP:14299;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14300 14300 31.5 . . ID=Chr1:SNP:14300;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14301 14301 31.5 . . ID=Chr1:SNP:14301;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14302 14302 31.5 . . ID=Chr1:SNP:14302;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14303 14303 31.5 . . ID=Chr1:SNP:14303;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14304 14304 31.5 . . ID=Chr1:SNP:14304;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14305 14305 31.5 . . ID=Chr1:SNP:14305;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14306 14306 26 . . ID=Chr1:SNP:14306;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14307 14307 26 . . ID=Chr1:SNP:14307;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14308 14308 31.5 . . ID=Chr1:SNP:14308;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14309 14309 31.5 . . ID=Chr1:SNP:14309;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14310 14310 31.5 . . ID=Chr1:SNP:14310;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14311 14311 31.5 . . ID=Chr1:SNP:14311;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14312 14312 26 . . ID=Chr1:SNP:14312;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14313 14313 26 . . ID=Chr1:SNP:14313;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14314 14314 31.5 . . ID=Chr1:SNP:14314;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14315 14315 31.5 . . ID=Chr1:SNP:14315;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14316 14316 31.5 . . ID=Chr1:SNP:14316;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14317 14317 31.5 . . ID=Chr1:SNP:14317;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14318 14318 31.5 . . ID=Chr1:SNP:14318;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14319 14319 31.5 . . ID=Chr1:SNP:14319;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14320 14320 31.5 . . ID=Chr1:SNP:14320;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS INDEL 14320 14322 33.5 . . ID=Chr1:INDEL:14320;Variant_seq=.;Reference_seq=TC;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14321 14321 31.5 . . ID=Chr1:SNP:14321;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14322 14322 26 . . ID=Chr1:SNP:14322;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14323 14323 31.5 . . ID=Chr1:SNP:14323;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14324 14324 26 . . ID=Chr1:SNP:14324;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14325 14325 31.5 . . ID=Chr1:SNP:14325;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14326 14326 31.5 . . ID=Chr1:SNP:14326;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14327 14327 26 . . ID=Chr1:SNP:14327;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 14328 14328 31.5 . . ID=Chr1:SNP:14328;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120479 120479 31.5 . . ID=Chr1:SNP:120479;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120480 120480 31.5 . . ID=Chr1:SNP:120480;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120481 120481 31.5 . . ID=Chr1:SNP:120481;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120482 120482 31.5 . . ID=Chr1:SNP:120482;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120483 120483 31.5 . . ID=Chr1:SNP:120483;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120484 120484 31.5 . . ID=Chr1:SNP:120484;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120485 120485 31.5 . . ID=Chr1:SNP:120485;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120486 120486 31.5 . . ID=Chr1:SNP:120486;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120487 120487 31.5 . . ID=Chr1:SNP:120487;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120488 120488 31.5 . . ID=Chr1:SNP:120488;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120489 120489 31.5 . . ID=Chr1:SNP:120489;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120490 120490 31.5 . . ID=Chr1:SNP:120490;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120491 120491 31.5 . . ID=Chr1:SNP:120491;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120492 120492 31.5 . . ID=Chr1:SNP:120492;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120493 120493 31.5 . . ID=Chr1:SNP:120493;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120494 120494 31.5 . . ID=Chr1:SNP:120494;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120495 120495 31.5 . . ID=Chr1:SNP:120495;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120496 120496 31.5 . . ID=Chr1:SNP:120496;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120497 120497 31.5 . . ID=Chr1:SNP:120497;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120498 120498 26 . . ID=Chr1:SNP:120498;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120499 120499 31.5 . . ID=Chr1:SNP:120499;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120500 120500 31.5 . . ID=Chr1:SNP:120500;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120501 120501 31.5 . . ID=Chr1:SNP:120501;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120502 120502 31.5 . . ID=Chr1:SNP:120502;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120503 120503 31.5 . . ID=Chr1:SNP:120503;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120504 120504 31.5 . . ID=Chr1:SNP:120504;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120505 120505 31.5 . . ID=Chr1:SNP:120505;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120506 120506 31.5 . . ID=Chr1:SNP:120506;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120507 120507 31.5 . . ID=Chr1:SNP:120507;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120508 120508 26 . . ID=Chr1:SNP:120508;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120509 120509 31.5 . . ID=Chr1:SNP:120509;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120510 120510 31.5 . . ID=Chr1:SNP:120510;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120511 120511 31.5 . . ID=Chr1:SNP:120511;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120512 120512 31.5 . . ID=Chr1:SNP:120512;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120513 120513 31.5 . . ID=Chr1:SNP:120513;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120514 120514 31.5 . . ID=Chr1:SNP:120514;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120515 120515 26 . . ID=Chr1:SNP:120515;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120516 120516 31.5 . . ID=Chr1:SNP:120516;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120517 120517 31.5 . . ID=Chr1:SNP:120517;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120518 120518 26 . . ID=Chr1:SNP:120518;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120519 120519 31.5 . . ID=Chr1:SNP:120519;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120520 120520 31.5 . . ID=Chr1:SNP:120520;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120521 120521 31.5 . . ID=Chr1:SNP:120521;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120522 120522 31.5 . . ID=Chr1:SNP:120522;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120523 120523 31.5 . . ID=Chr1:SNP:120523;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120524 120524 31.5 . . ID=Chr1:SNP:120524;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120525 120525 31.5 . . ID=Chr1:SNP:120525;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120526 120526 31.5 . . ID=Chr1:SNP:120526;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120527 120527 31.5 . . ID=Chr1:SNP:120527;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120528 120528 31.5 . . ID=Chr1:SNP:120528;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120529 120529 31.5 . . ID=Chr1:SNP:120529;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120530 120530 31.5 . . ID=Chr1:SNP:120530;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120531 120531 31.5 . . ID=Chr1:SNP:120531;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120532 120532 31.5 . . ID=Chr1:SNP:120532;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120533 120533 31.5 . . ID=Chr1:SNP:120533;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120534 120534 31.5 . . ID=Chr1:SNP:120534;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120535 120535 31.5 . . ID=Chr1:SNP:120535;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120536 120536 31.5 . . ID=Chr1:SNP:120536;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120537 120537 31.5 . . ID=Chr1:SNP:120537;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120538 120538 31.5 . . ID=Chr1:SNP:120538;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120539 120539 31.5 . . ID=Chr1:SNP:120539;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120540 120540 31.5 . . ID=Chr1:SNP:120540;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120541 120541 31.5 . . ID=Chr1:SNP:120541;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120542 120542 31.5 . . ID=Chr1:SNP:120542;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120543 120543 31.5 . . ID=Chr1:SNP:120543;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120544 120544 31.5 . . ID=Chr1:SNP:120544;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120545 120545 31.5 . . ID=Chr1:SNP:120545;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120546 120546 31.5 . . ID=Chr1:SNP:120546;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120547 120547 31.5 . . ID=Chr1:SNP:120547;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120548 120548 31.5 . . ID=Chr1:SNP:120548;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120549 120549 31.5 . . ID=Chr1:SNP:120549;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120550 120550 31.5 . . ID=Chr1:SNP:120550;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120551 120551 31.5 . . ID=Chr1:SNP:120551;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120552 120552 31.5 . . ID=Chr1:SNP:120552;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120553 120553 26 . . ID=Chr1:SNP:120553;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120554 120554 31.5 . . ID=Chr1:SNP:120554;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120555 120555 31.5 . . ID=Chr1:SNP:120555;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120556 120556 31.5 . . ID=Chr1:SNP:120556;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120557 120557 31.5 . . ID=Chr1:SNP:120557;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120558 120558 31.5 . . ID=Chr1:SNP:120558;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120559 120559 31.5 . . ID=Chr1:SNP:120559;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120560 120560 31.5 . . ID=Chr1:SNP:120560;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120561 120561 26 . . ID=Chr1:SNP:120561;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120562 120562 31.5 . . ID=Chr1:SNP:120562;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120563 120563 31.5 . . ID=Chr1:SNP:120563;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120564 120564 31.5 . . ID=Chr1:SNP:120564;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120565 120565 31.5 . . ID=Chr1:SNP:120565;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120566 120566 31.5 . . ID=Chr1:SNP:120566;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120567 120567 31.5 . . ID=Chr1:SNP:120567;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120568 120568 31.5 . . ID=Chr1:SNP:120568;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120569 120569 31.5 . . ID=Chr1:SNP:120569;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120570 120570 31.5 . . ID=Chr1:SNP:120570;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120571 120571 26 . . ID=Chr1:SNP:120571;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120572 120572 31.5 . . ID=Chr1:SNP:120572;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120573 120573 26 . . ID=Chr1:SNP:120573;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120574 120574 31.5 . . ID=Chr1:SNP:120574;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120575 120575 26 . . ID=Chr1:SNP:120575;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120576 120576 31.5 . . ID=Chr1:SNP:120576;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120577 120577 26 . . ID=Chr1:SNP:120577;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120578 120578 26 . . ID=Chr1:SNP:120578;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120594 120594 31.5 . . ID=Chr1:SNP:120594;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120595 120595 31.5 . . ID=Chr1:SNP:120595;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120596 120596 31.5 . . ID=Chr1:SNP:120596;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120597 120597 31.5 . . ID=Chr1:SNP:120597;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120598 120598 31.5 . . ID=Chr1:SNP:120598;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120599 120599 31.5 . . ID=Chr1:SNP:120599;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120600 120600 31.5 . . ID=Chr1:SNP:120600;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120601 120601 31.5 . . ID=Chr1:SNP:120601;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120602 120602 31.5 . . ID=Chr1:SNP:120602;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120603 120603 31.5 . . ID=Chr1:SNP:120603;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120604 120604 31.5 . . ID=Chr1:SNP:120604;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120605 120605 31.5 . . ID=Chr1:SNP:120605;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120606 120606 31.5 . . ID=Chr1:SNP:120606;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120607 120607 26 . . ID=Chr1:SNP:120607;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120608 120608 31.5 . . ID=Chr1:SNP:120608;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120609 120609 31.5 . . ID=Chr1:SNP:120609;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120610 120610 31.5 . . ID=Chr1:SNP:120610;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120611 120611 31.5 . . ID=Chr1:SNP:120611;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120612 120612 31.5 . . ID=Chr1:SNP:120612;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120613 120613 31.5 . . ID=Chr1:SNP:120613;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120614 120614 31.5 . . ID=Chr1:SNP:120614;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120615 120615 31.5 . . ID=Chr1:SNP:120615;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120616 120616 31.5 . . ID=Chr1:SNP:120616;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120617 120617 26 . . ID=Chr1:SNP:120617;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120618 120618 31.5 . . ID=Chr1:SNP:120618;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120619 120619 31.5 . . ID=Chr1:SNP:120619;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120620 120620 31.5 . . ID=Chr1:SNP:120620;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120621 120621 31.5 . . ID=Chr1:SNP:120621;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120622 120622 31.5 . . ID=Chr1:SNP:120622;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120623 120623 31.5 . . ID=Chr1:SNP:120623;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120624 120624 31.5 . . ID=Chr1:SNP:120624;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120625 120625 31.5 . . ID=Chr1:SNP:120625;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120626 120626 31.5 . . ID=Chr1:SNP:120626;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120627 120627 31.5 . . ID=Chr1:SNP:120627;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120628 120628 31.5 . . ID=Chr1:SNP:120628;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120629 120629 31.5 . . ID=Chr1:SNP:120629;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120630 120630 31.5 . . ID=Chr1:SNP:120630;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120631 120631 31.5 . . ID=Chr1:SNP:120631;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120632 120632 26 . . ID=Chr1:SNP:120632;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120633 120633 31.5 . . ID=Chr1:SNP:120633;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120634 120634 26 . . ID=Chr1:SNP:120634;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120635 120635 31.5 . . ID=Chr1:SNP:120635;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120636 120636 31.5 . . ID=Chr1:SNP:120636;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120637 120637 31.5 . . ID=Chr1:SNP:120637;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120638 120638 31.5 . . ID=Chr1:SNP:120638;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120639 120639 31.5 . . ID=Chr1:SNP:120639;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120640 120640 31.5 . . ID=Chr1:SNP:120640;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120641 120641 31.5 . . ID=Chr1:SNP:120641;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120642 120642 31.5 . . ID=Chr1:SNP:120642;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120643 120643 31.5 . . ID=Chr1:SNP:120643;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120644 120644 26 . . ID=Chr1:SNP:120644;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120645 120645 31.5 . . ID=Chr1:SNP:120645;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120646 120646 26 . . ID=Chr1:SNP:120646;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120647 120647 31.5 . . ID=Chr1:SNP:120647;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120648 120648 31.5 . . ID=Chr1:SNP:120648;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120649 120649 31.5 . . ID=Chr1:SNP:120649;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120650 120650 31.5 . . ID=Chr1:SNP:120650;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120651 120651 31.5 . . ID=Chr1:SNP:120651;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120652 120652 31.5 . . ID=Chr1:SNP:120652;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120653 120653 31.5 . . ID=Chr1:SNP:120653;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120654 120654 31.5 . . ID=Chr1:SNP:120654;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120655 120655 31.5 . . ID=Chr1:SNP:120655;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120656 120656 31.5 . . ID=Chr1:SNP:120656;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120657 120657 31.5 . . ID=Chr1:SNP:120657;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120658 120658 31.5 . . ID=Chr1:SNP:120658;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120659 120659 31.5 . . ID=Chr1:SNP:120659;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120660 120660 31.5 . . ID=Chr1:SNP:120660;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120661 120661 31.5 . . ID=Chr1:SNP:120661;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120662 120662 31.5 . . ID=Chr1:SNP:120662;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120663 120663 26 . . ID=Chr1:SNP:120663;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120664 120664 26 . . ID=Chr1:SNP:120664;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120665 120665 31.5 . . ID=Chr1:SNP:120665;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120666 120666 31.5 . . ID=Chr1:SNP:120666;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120667 120667 31.5 . . ID=Chr1:SNP:120667;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120668 120668 31.5 . . ID=Chr1:SNP:120668;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120669 120669 31.5 . . ID=Chr1:SNP:120669;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120670 120670 31.5 . . ID=Chr1:SNP:120670;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120671 120671 31.5 . . ID=Chr1:SNP:120671;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120672 120672 31.5 . . ID=Chr1:SNP:120672;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120673 120673 31.5 . . ID=Chr1:SNP:120673;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120674 120674 31.5 . . ID=Chr1:SNP:120674;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120675 120675 26 . . ID=Chr1:SNP:120675;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120676 120676 26 . . ID=Chr1:SNP:120676;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120677 120677 31.5 . . ID=Chr1:SNP:120677;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120678 120678 31.5 . . ID=Chr1:SNP:120678;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120679 120679 31.5 . . ID=Chr1:SNP:120679;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120680 120680 31.5 . . ID=Chr1:SNP:120680;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120681 120681 31.5 . . ID=Chr1:SNP:120681;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120682 120682 26 . . ID=Chr1:SNP:120682;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120683 120683 26 . . ID=Chr1:SNP:120683;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120684 120684 31.5 . . ID=Chr1:SNP:120684;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120685 120685 26 . . ID=Chr1:SNP:120685;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120686 120686 26 . . ID=Chr1:SNP:120686;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120687 120687 31.5 . . ID=Chr1:SNP:120687;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120688 120688 26 . . ID=Chr1:SNP:120688;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120689 120689 31.5 . . ID=Chr1:SNP:120689;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120690 120690 26 . . ID=Chr1:SNP:120690;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120691 120691 31.5 . . ID=Chr1:SNP:120691;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120692 120692 26 . . ID=Chr1:SNP:120692;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 120693 120693 31.5 . . ID=Chr1:SNP:120693;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072445 1072445 26 . . ID=Chr1:SNP:1072445;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072446 1072446 31.5 . . ID=Chr1:SNP:1072446;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072447 1072447 31.5 . . ID=Chr1:SNP:1072447;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072448 1072448 31.5 . . ID=Chr1:SNP:1072448;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072449 1072449 26 . . ID=Chr1:SNP:1072449;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072450 1072450 31.5 . . ID=Chr1:SNP:1072450;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072451 1072451 26 . . ID=Chr1:SNP:1072451;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072452 1072452 31.5 . . ID=Chr1:SNP:1072452;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072453 1072453 26 . . ID=Chr1:SNP:1072453;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072454 1072454 26 . . ID=Chr1:SNP:1072454;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072455 1072455 26 . . ID=Chr1:SNP:1072455;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072456 1072456 31.5 . . ID=Chr1:SNP:1072456;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072457 1072457 31.5 . . ID=Chr1:SNP:1072457;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072458 1072458 31.5 . . ID=Chr1:SNP:1072458;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072459 1072459 26 . . ID=Chr1:SNP:1072459;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072460 1072460 31.5 . . ID=Chr1:SNP:1072460;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072461 1072461 31.5 . . ID=Chr1:SNP:1072461;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS INDEL 1072461 1072462 33.5 . . ID=Chr1:INDEL:1072461;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072462 1072462 31.5 . . ID=Chr1:SNP:1072462;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072463 1072463 31.5 . . ID=Chr1:SNP:1072463;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072464 1072464 31.5 . . ID=Chr1:SNP:1072464;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072465 1072465 31.5 . . ID=Chr1:SNP:1072465;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072466 1072466 31.5 . . ID=Chr1:SNP:1072466;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072467 1072467 32 . . ID=Chr1:SNP:1072467;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072468 1072468 32.4 . . ID=Chr1:SNP:1072468;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072469 1072469 32.4 . . ID=Chr1:SNP:1072469;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072470 1072470 32.4 . . ID=Chr1:SNP:1072470;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072471 1072471 32.4 . . ID=Chr1:SNP:1072471;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072472 1072472 32.4 . . ID=Chr1:SNP:1072472;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072473 1072473 32.4 . . ID=Chr1:SNP:1072473;Variant_seq=.;Reference_seq=C;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072474 1072474 32.4 . . ID=Chr1:SNP:1072474;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072475 1072475 32.4 . . ID=Chr1:SNP:1072475;Variant_seq=.;Reference_seq=G;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072476 1072476 32.4 . . ID=Chr1:SNP:1072476;Variant_seq=.;Reference_seq=T;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072477 1072477 32.4 . . ID=Chr1:SNP:1072477;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA +Chr1 SAMTOOLS SNP 1072478 1072478 32.4 . . ID=Chr1:SNP:1072478;Variant_seq=.;Reference_seq=A;Total_reads=1;Zygosity=NA:NA