Mercurial > repos > john-mccallum > pcr_markers
diff README.md @ 6:f201e8c6e004 draft default tip
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author | ben-warren |
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date | Mon, 07 Jul 2014 19:28:17 -0400 |
parents | b321e0517be3 |
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--- a/README.md Thu May 22 20:30:19 2014 -0400 +++ b/README.md Mon Jul 07 19:28:17 2014 -0400 @@ -1,15 +1,15 @@ galaxy-pcr-markers ================== -Scripts for design of PCR-based Marker Assays from DNA sequence variant data, and xml wrappers for use in Galaxy workflow environment +Scripts for design of PCR-based Marker Assays from DNA sequence variant data, and xml wrappers for use in the Galaxy workflow environment Also available for download at Galaxy Toolshed http://toolshed.g2.bx.psu.edu/ hg clone http://toolshed.g2.bx.psu.edu/repos/john-mccallum/pcr_markers -NOTE that the primer design tool *design_primers.py* relies on EMBOSS ePrimer3 which depends on Primer3 1.1.4. -The updated tool *design_HRM_primers.py* does not have this restriction and should work with Primer3 V2. +NOTE that the primer design tool *design_primers.py* no longer relies on EMBOSS ePrimer3 (which depends on Primer3 1.1.4.) + and should work with Primer3 V2. -Please see development branch HRM for optimised design of high-resolution melting PCR assays using the uMelt web service at University of Utah. +This release adds optimised design of high-resolution melting PCR assays using the uMelt web service provided by the Wittwer Lab at University of Utah https://www.dna.utah.edu/umelt/umelt.html **CITATION** @@ -19,6 +19,9 @@ BMC Genomics 2012, 13:637 http://www.biomedcentral.com/1471-2164/13/637/abstract +uMELT: prediction of high-resolution melting curves and dynamic melting profiles of PCR products in a rich web application. +Zachary Dwight1, Robert Palais and Carl T. Wittwer http://bioinformatics.oxfordjournals.org/content/27/7/1019 + **Acknowledgements** Current development of these tools is funded by the New Zealand Ministry for Business, Innovation & Employment project 'Virtual Institute of Statistical Genetics' (VISG) See http://www.visg.co.nz