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1 <tool id="PhageDPO" name="PhageDPO" version="0.1.0" python_template_version="3.5">
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2 <description>
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3 Phage Depolymerase Finder
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4 </description>
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5 <requirements>
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6 <requirement type="package" version="1.78">biopython</requirement>
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7 <requirement type="package" version="0.24.1">scikit-learn</requirement>
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8 <requirement type="package" version="1.19.2">numpy</requirement>
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9 <requirement type="package" version="1.2.3">pandas</requirement>
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10 </requirements>
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11 <command detect_errors="exit_code"><![CDATA[
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12 python '$__tool_directory__/DPOGALAXY.py' '$adv.model' '${input1}'
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13 ]]></command>
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14 <inputs>
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15 <param type="data" name="input1" format="fasta" label="Fasta file"/>
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16 </inputs>
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17 <outputs>
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18 <data name="output1" format="html" from_work_dir="output.html"
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19 label="DPO Prediction"/>
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20 </outputs>
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21 <tests>
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22 <test>
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23 <param name="model" value="SVM4311"/>
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24 <param name="input1" value="fasta_file.fasta"/>
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25 <output name="output1" file="output.html"/>
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26 </test>
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27 </tests>
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28 <help><![CDATA[
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29
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30 ========
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31 PhageDPO
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32 ========
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33
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34 Predicts the existance of Phage Polysaccharide Depolymerase.
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35
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36 PhageDPO is a python script that predicts the existance of depolymerases (DPOs) using supervised machine learning models.
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37
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38 **Inputs:**
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39
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40 * fasta file: fasta file format contain the nucleotide sequences.
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41
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42 **Outputs:**
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43
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44 The tool outputs an html file containing the name of the sequence and the percentage of positive prediction for DPO.
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45
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46 **Requirements:**
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47
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48 * Biopython
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49 * Sklearn
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50 * Numpy
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51 * Pandas
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52
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53 ]]></help>
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54 </tool> |
