# HG changeset patch
# User jose_duarte
# Date 1732200221 0
# Node ID e3d2637686a0d4d4eafe9e08b5c2a6638b2b4b32
# Parent  ddd9e3b58525d4efc9ae1789916d138aef78e589
Uploaded

diff -r ddd9e3b58525 -r e3d2637686a0 PhageDPO.xml
--- a/PhageDPO.xml	Fri Feb 02 16:28:15 2024 +0000
+++ b/PhageDPO.xml	Thu Nov 21 14:43:41 2024 +0000
@@ -1,53 +1,35 @@
-<tool id="PhageDPO" name="PhageDPO" version="0.1.0" python_template_version="3.5">
-	<description>
-Phage Depolymerase Finder
-	</description>
-    <requirements>
-        <requirement type="package" version="1.78">biopython</requirement>
-        <requirement type="package" version="0.24.1">scikit-learn</requirement>
-        <requirement type="package" version="1.19.2">numpy</requirement>
-        <requirement type="package" version="1.2.3">pandas</requirement>
-    </requirements>
-    <command detect_errors="exit_code"><![CDATA[
-        python '$__tool_directory__/DPOGALAXY.py' '${input1}'
-    ]]></command>
-    <inputs>
-		<param type="data" name="input1" format="fasta" label="Fasta file"/>
-    </inputs>
-    <outputs>
-		<data name="output1" format="html" from_work_dir="output.html" 
-		label="DPO Prediction"/>
-    </outputs>
-	<tests>
-        <test>
-	        <param name="input1" value="fasta_file.fasta"/>
-            <output name="output1" file="output.html"/>
-        </test>
-    </tests>
-    <help><![CDATA[
-	
-========
-PhageDPO
-========
-
-Predicts the existance of Phage Polysaccharide Depolymerase.
-
-PhageDPO is a python script that predicts the existance of depolymerases (DPOs) using supervised machine learning models. 
-
-**Inputs:**
-
-* fasta file: fasta file format contain the nucleotide sequences.
-
-**Outputs:**
-
-The tool outputs an html file containing the name of the sequence and the percentage of positive prediction for DPO.	
-
-**Requirements:**
-	
-* Biopython
-* Sklearn
-* Numpy
-* Pandas
-
-    ]]></help>
-</tool>
\ No newline at end of file
+<help><![CDATA[
+
+========
+PhageDPO
+========
+
+Predicts the existence of Phage Polysaccharide Depolymerase.
+
+PhageDPO is a python script that predicts the existence of depolymerases (DPOs) using supervised machine learning models. 
+
+**Inputs:**
+
+* fasta file: fasta file format containing the nucleotide sequences.
+
+**Outputs:**
+
+The tool outputs an html file containing the name of the sequence and the percentage of positive prediction for DPO.
+
+**Requirements:**
+
+* Biopython
+* Sklearn
+* Numpy
+* Pandas
+
+---
+
+### Send Feedback
+
+If you have feedback or suggestions, please feel free to email us by clicking the button below:
+
+<!-- Create a button linking to the email -->
+<a href="mailto:mfernandasvieira@ceb.uminho.pt?subject=PhageDPO%20Feedback" style="padding:10px; background-color:#4CAF50; color:white; text-decoration:none; border-radius:5px;">Send Feedback</a>
+
+]]></help>