Mercurial > repos > jowong > add_sample_as_first_line
diff add_sample_name_as_first_line.py @ 3:98f9da980bf5 draft default tip
planemo upload for repository https://github.com/jowong4/add_sample_name_as_first_line_of_file commit f3fe76f6cbf17b0ec4162065206483652a6519b7-dirty
author | jowong |
---|---|
date | Fri, 09 Nov 2018 12:27:57 -0500 |
parents | 74a9f37e2bc9 |
children |
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--- a/add_sample_name_as_first_line.py Fri Oct 26 17:52:33 2018 -0400 +++ b/add_sample_name_as_first_line.py Fri Nov 09 12:27:57 2018 -0500 @@ -17,7 +17,7 @@ #print >> output, args.label #print >> output, input -sample_name = re.sub('(_1.fastq(.gz)*|_2.fastq(.gz)*|.fastq(.gz)*)', '', args.label.rstrip().lstrip()) +sample_name = re.sub('(_1.fastq(.gz)*|_2.fastq(.gz)*|.fastq(.gz)*)', '', args.sample.rstrip().lstrip()) with open(args.input) as input: with open(args.output, 'w') as output: