Mercurial > repos > jowong > add_sample_as_first_line
view add_sample_name_as_first_line.xml @ 0:231b21337c43 draft
planemo upload for repository https://github.com/jowong4/add_sample_name_as_first_line_of_file commit 462cf96a681fad46e20321feec5996d1e558a0d3
author | jowong |
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date | Thu, 27 Sep 2018 17:05:18 -0400 |
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children | 74a9f37e2bc9 |
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<tool id="my_addName" name="Add sample name as first line" version="0.1.0"> <description>to an existing tabular file</description> <command interpreter="python">add_sample_name_as_first_line.py --input "$input" --sample "$input2.element_identifier" --output "$output" </command> <inputs> <param format="tabular" name="input" type="data" label="to Dataset" /> <param name="input2" format="data" type="data" label="sample" /> </inputs> <outputs> <data name="output" format="tabular" /> </outputs> <tests> <test> <param name="input" value="test.tab" ftype="tabular" /> <param name="input2" value="ABC_1.fastq.gz" /> <output name="output" file="test_with_header.tab" ftype="tabular"/> </test> </tests> <help> **What it does** Adds a new line with the name of the sample file and removing [_12].fastq.gz from the name if there is match to the pattern. Written by Johnathan Kwan Long Wong, johnathanwong4@gmail.com </help> <citations> <citation type="bibtex">@UNPUBLISHED{Johnathan2018, author = "Johnathan W"}</citation> </citations> </tool>