annotate data_path.xml @ 1:341538cb873b draft default tip

planemo upload
author jowong
date Fri, 26 Oct 2018 10:31:01 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
341538cb873b planemo upload
jowong
parents:
diff changeset
1 <tool id="data_path" name="Data Path" version="1.0.0">
341538cb873b planemo upload
jowong
parents:
diff changeset
2 <description>creates a txt file of the paths of items in a data collection</description>
341538cb873b planemo upload
jowong
parents:
diff changeset
3 <command interpreter="python"><![CDATA[
341538cb873b planemo upload
jowong
parents:
diff changeset
4 data_path.py -i #for $path in $paths# $path.forward #end for# -j #for $path in $paths# $path.reverse #end for#
341538cb873b planemo upload
jowong
parents:
diff changeset
5 ]]></command>
341538cb873b planemo upload
jowong
parents:
diff changeset
6 <inputs>
341538cb873b planemo upload
jowong
parents:
diff changeset
7 <param name="paths" type="data_collection" format="data" label="Collection of files" help="" optional="False" multiple="True"/>
341538cb873b planemo upload
jowong
parents:
diff changeset
8 </inputs>
341538cb873b planemo upload
jowong
parents:
diff changeset
9 <outputs>
341538cb873b planemo upload
jowong
parents:
diff changeset
10 <data name="output" label="Paths of ${on_string}" format="txt" from_work_dir="paths.txt"/>
341538cb873b planemo upload
jowong
parents:
diff changeset
11 </outputs>
341538cb873b planemo upload
jowong
parents:
diff changeset
12 <help>
341538cb873b planemo upload
jowong
parents:
diff changeset
13 This tool outputs the paths of the files in a data collection
341538cb873b planemo upload
jowong
parents:
diff changeset
14 </help>
341538cb873b planemo upload
jowong
parents:
diff changeset
15 <citations>
341538cb873b planemo upload
jowong
parents:
diff changeset
16 </citations>
341538cb873b planemo upload
jowong
parents:
diff changeset
17 </tool>