Mercurial > repos > jowong > khmer_load_into_counting

comparison khmer_load_into_counting.xml @ 2:ab0f91be3a90 draft default tip

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planemo upload
author jowong
date Mon, 26 Nov 2018 03:02:53 -0500
parents f491d18251e9
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1:f491d18251e9 2:ab0f91be3a90
1 <tool id="khmer_load_into_counting" name="Load Into Counting" version="1.0.5"> 1 <tool id="khmer_load_into_counting" name="Load Into Counting" version="1.0.6">
2 <description>Creates k-mer countgraph using reads</description> 2 <description>Creates k-mer countgraph using reads</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="2.1.2">khmer</requirement> 4 <requirement type="package" version="2.1.2">khmer</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
50 <param name="max_mem" type="integer" value="0" label="Maximum Memory" help="number of tables to use (default: False)" /> 50 <param name="max_mem" type="integer" value="0" label="Maximum Memory" help="number of tables to use (default: False)" />
51 <param name="fp_rate" type="integer" value="0" label="FP rate override" help="Override the automatic FP rate setting for the current script" /> 51 <param name="fp_rate" type="integer" value="0" label="FP rate override" help="Override the automatic FP rate setting for the current script" />
52 </section> 52 </section>
53 </inputs> 53 </inputs>
54 <outputs> 54 <outputs>
55 <data name="hash_output" label="Hash output" format="data" from_work_dir="hash.ct.gz"/> 55 <data name="hash_output" label="Hash output" format="data" type="data_collection" from_work_dir="hash.ct.gz"/>
56 </outputs> 56 </outputs>
57 <help><![CDATA[ 57 <help><![CDATA[
58 || This is the script load-into-counting.py in khmer. 58 || This is the script load-into-counting.py in khmer.
59 || You are running khmer version 2.1.2 59 || You are running khmer version 2.1.2
60 || You are also using screed version 1.0 60 || You are also using screed version 1.0