Mercurial > repos > jowong > prince_galaxy
comparison filler.py @ 4:82569b47df8d draft
planemo upload
| author | jowong |
|---|---|
| date | Mon, 29 Oct 2018 07:52:12 -0400 |
| parents | |
| children | 63f3743c2ae4 |
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| 3:dde3036465de | 4:82569b47df8d |
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| 1 #!/usr/bin/env python | |
| 2 | |
| 3 import sys | |
| 4 import argparse as ap | |
| 5 | |
| 6 parser = ap.ArgumentParser(prog='filler', conflict_handler='resolve', | |
| 7 description="produce filler collection to deal with galaxy handling") | |
| 8 | |
| 9 input = parser.add_argument_group('Input', '') | |
| 10 input.add_argument('-i', '--input', nargs=1, required=True, help="Paths to forward reads") | |
| 11 input.add_argument('-o', '--output', nargs=1, required=True, help="output") | |
| 12 | |
| 13 if len(sys.argv) == 0: | |
| 14 parser.print_usage() | |
| 15 sys.exit(1) | |
| 16 | |
| 17 args = parser.parse_args() | |
| 18 output = open(args.output[0], 'w') | |
| 19 output.write(args.input[0]) | |
| 20 output.write("\n") |