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1 <tool id="spotyping_postprocess" name="Spotyping Postprocess" version="1.0.1">
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2 <description>Postprocess spotyping galaxy output</description>
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3 <command interpreter="python"><![CDATA[
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4 spotyping_postprocess.py -s #for $path in $paths# $path.element_identifier #end for# -f #for $path in $paths# $path #end for#
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5 ]]></command>
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6 <inputs>
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7 <param name="paths" type="data" format="txt" label="Collection of files" help="" optional="False" multiple="True"/>
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8 </inputs>
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9 <outputs>
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10 <data name="output" format="txt" from_work_dir="spotyping_postprocess_output.txt"/>
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11 </outputs>
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12 <help>
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13 This tool processes the collection of spotyping galaxy results output and replaces the galaxy names with the appopriate sample names and concatenates them
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14 </help>
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15 <citations>
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16 </citations>
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17 </tool>
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