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comparison spotyping_postprocess.xml @ 1:fcfd1e66edf9 draft default tip

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planemo upload
author jowong
date Tue, 13 Nov 2018 10:47:19 -0500
parents 7412632c7b0e
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0:7412632c7b0e 1:fcfd1e66edf9
1 <tool id="spotyping_postprocess" name="Spotyping Postprocess" version="1.0.0"> 1 <tool id="spotyping_postprocess" name="Spotyping Postprocess" version="1.0.1">
2 <description>Postprocess spotyping galaxy output</description> 2 <description>Postprocess spotyping galaxy output</description>
3 <command interpreter="python"><![CDATA[ 3 <command interpreter="python"><![CDATA[
4 spotyping_postprocess.py -s #for $path in $paths# $path.element_identifier #end for# -f #for $path in $paths# $path #end for# 4 spotyping_postprocess.py -s #for $path in $paths# $path.element_identifier #end for# -f #for $path in $paths# $path #end for#
5 ]]></command> 5 ]]></command>
6 <inputs> 6 <inputs>
8 </inputs> 8 </inputs>
9 <outputs> 9 <outputs>
10 <data name="output" format="txt" from_work_dir="spotyping_postprocess_output.txt"/> 10 <data name="output" format="txt" from_work_dir="spotyping_postprocess_output.txt"/>
11 </outputs> 11 </outputs>
12 <help> 12 <help>
13 This tool processes the spotyping galaxy output such that it is in line with the command line 13 This tool processes the collection of spotyping galaxy results output and replaces the galaxy names with the appopriate sample names and concatenates them
14 </help> 14 </help>
15 <citations> 15 <citations>
16 </citations> 16 </citations>
17 </tool> 17 </tool>