<tool id="spotyping_postprocess" name="Spotyping Postprocess" version="1.0.1">
    <description>Postprocess spotyping galaxy output</description>
    <command interpreter="python"><![CDATA[
        spotyping_postprocess.py  -s #for $path in $paths# $path.element_identifier #end for# -f #for $path in $paths# $path #end for#
    ]]></command>
    <inputs>
        <param name="paths" type="data" format="txt" label="Collection of files" help="" optional="False" multiple="True"/>
    </inputs>
    <outputs>
        <data name="output" format="txt" from_work_dir="spotyping_postprocess_output.txt"/>
    </outputs>
    <help>
This tool processes the collection of spotyping galaxy results output and replaces the galaxy names with the appopriate sample names and concatenates them
    </help>
    <citations>
    </citations>
</tool>