Mercurial > repos > jpetteng > ectyper

comparison ecoli_serotyping/ectyper.xml @ 17:4d3549d9aad1 draft

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Uploaded
author jpetteng
date Sun, 07 Jan 2018 14:25:15 -0500
parents d107c0bcfefe
children 210dafd169d9
comparison
equal deleted inserted replaced
16:d107c0bcfefe 17:4d3549d9aad1
8 <requirement type="package">bowtie</requirement> 8 <requirement type="package">bowtie</requirement>
9 <requirement type="package">spades</requirement> 9 <requirement type="package">spades</requirement>
10 <requirement type="package">seqtk</requirement> 10 <requirement type="package">seqtk</requirement>
11 <requirement type="package">pandas</requirement> 11 <requirement type="package">pandas</requirement>
12 <requirement type="package">mash</requirement> 12 <requirement type="package">mash</requirement>
13 <requirement type="package">request</requirement> 13 <requirement type="package">requests</requirement>
14 </requirements> 14 </requirements>
15 <command detect_errors="exit_code"><![CDATA[ 15 <command detect_errors="exit_code"><![CDATA[
16 #if $jobtype.select == "asm" 16 #if $jobtype.select == "asm"
17 ln -s $jobtype.draft sample.fasta; 17 ln -s $jobtype.draft sample.fasta;
18 #else if $jobtype.select == "se" 18 #else if $jobtype.select == "se"