Mercurial > repos > jpetteng > ectyper

comparison ecoli_serotyping/ectyper.xml @ 14:cc089f376052 draft

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Uploaded
author jpetteng
date Sat, 06 Jan 2018 14:16:29 -0500
parents d2123e91fb04
children d107c0bcfefe
comparison
equal deleted inserted replaced
13:082e5ffe8a15 14:cc089f376052
7 <requirement type="package">bcftools</requirement> 7 <requirement type="package">bcftools</requirement>
8 <requirement type="package">bowtie</requirement> 8 <requirement type="package">bowtie</requirement>
9 <requirement type="package">spades</requirement> 9 <requirement type="package">spades</requirement>
10 <requirement type="package">seqtk</requirement> 10 <requirement type="package">seqtk</requirement>
11 <requirement type="package">pandas</requirement> 11 <requirement type="package">pandas</requirement>
12 # <requirement type="package">mash</requirement> 12 <requirement type="package">mash</requirement>
13 <requirement type="package">urllib</requirement>
13 </requirements> 14 </requirements>
14 <command detect_errors="exit_code"><![CDATA[ 15 <command detect_errors="exit_code"><![CDATA[
15 #if $jobtype.select == "asm" 16 #if $jobtype.select == "asm"
16 ln -s $jobtype.draft sample.fasta; 17 ln -s $jobtype.draft sample.fasta;
17 #else if $jobtype.select == "se" 18 #else if $jobtype.select == "se"