Mercurial > repos > jpetteng > ectyper

comparison ecoli_serotyping/ectyper.xml @ 12:d2123e91fb04 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jpetteng
date Sat, 06 Jan 2018 14:06:07 -0500
parents 8cb863e320e7
children cc089f376052
comparison
equal deleted inserted replaced
11:8cb863e320e7 12:d2123e91fb04
6 <requirement type="package">samtools</requirement> 6 <requirement type="package">samtools</requirement>
7 <requirement type="package">bcftools</requirement> 7 <requirement type="package">bcftools</requirement>
8 <requirement type="package">bowtie</requirement> 8 <requirement type="package">bowtie</requirement>
9 <requirement type="package">spades</requirement> 9 <requirement type="package">spades</requirement>
10 <requirement type="package">seqtk</requirement> 10 <requirement type="package">seqtk</requirement>
11 <requirement type="package">pandas</requirement>
11 # <requirement type="package">mash</requirement> 12 # <requirement type="package">mash</requirement>
12 </requirements> 13 </requirements>
13 <command detect_errors="exit_code"><![CDATA[ 14 <command detect_errors="exit_code"><![CDATA[
14 #if $jobtype.select == "asm" 15 #if $jobtype.select == "asm"
15 ln -s $jobtype.draft sample.fasta; 16 ln -s $jobtype.draft sample.fasta;