Mercurial > repos > jpetteng > ectyper
comparison ecoli_serotyping/loggingFunctions.py @ 6:fe3ceb5c4214 draft
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| author | jpetteng |
|---|---|
| date | Fri, 05 Jan 2018 15:43:14 -0500 |
| parents | |
| children |
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| 5:a202cc394af8 | 6:fe3ceb5c4214 |
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| 1 #!/usr/bin/env python | |
| 2 """ | |
| 3 Set up the logging | |
| 4 """ | |
| 5 | |
| 6 import logging | |
| 7 import os | |
| 8 | |
| 9 import ectyper.definitions as D | |
| 10 | |
| 11 | |
| 12 def initialize_logging(): | |
| 13 """ | |
| 14 Set up the screen and file logging. | |
| 15 | |
| 16 Args: | |
| 17 None | |
| 18 | |
| 19 Returns: | |
| 20 log_file (str): The log filename | |
| 21 """ | |
| 22 | |
| 23 # set up DEBUG logging to file, INFO logging to STDERR | |
| 24 log_file = os.path.join(D.WORKPLACE_DIR, 'ectyper.log') | |
| 25 | |
| 26 formatter = logging.Formatter( | |
| 27 '%(asctime)s %(name)-12s %(levelname)-8s %(message)s') | |
| 28 | |
| 29 # logging to file | |
| 30 logging.basicConfig( | |
| 31 level=logging.DEBUG, | |
| 32 format='%(asctime)s %(name)-12s %(levelname)-8s %(message)s', | |
| 33 datefmt='%m-%d %H:%M', | |
| 34 filename=log_file, | |
| 35 filemode='w') | |
| 36 | |
| 37 # define a Handler which writes INFO messages or higher to the sys.stderr | |
| 38 console = logging.StreamHandler() | |
| 39 console.setFormatter(formatter) | |
| 40 console.setLevel(logging.INFO) | |
| 41 | |
| 42 # add the handler to the root logger | |
| 43 logging.getLogger('').addHandler(console) | |
| 44 | |
| 45 return log_file |