Mercurial > repos > jpetteng > ectyper

diff ecoli_serotyping/ectyper.xml @ 22:54ae509ceeef draft

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author jpetteng
date Sun, 07 Jan 2018 15:05:41 -0500
parents 876b99d07203
children 41301e1f075a
line wrap: on
line diff
--- a/ecoli_serotyping/ectyper.xml	Sun Jan 07 15:02:39 2018 -0500
+++ b/ecoli_serotyping/ectyper.xml	Sun Jan 07 15:05:41 2018 -0500
@@ -21,7 +21,7 @@
         ln -s $jobtype.fastq2 sample_2.fastq;  
       #end if
 
-      $__tool_directory__/bin/ectyper
+      python $__tool_directory__/ectyper/ectyper.py
       #if $jobtype.select == "asm"
         -m 4
         -i sample.fasta