Mercurial > repos > jpetteng > ectyper
diff ecoli_serotyping/.travis.yml @ 0:7c687720c9e9 draft
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author | jpetteng |
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date | Fri, 05 Jan 2018 09:17:33 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ecoli_serotyping/.travis.yml Fri Jan 05 09:17:33 2018 -0500 @@ -0,0 +1,27 @@ +language: python +python: + # We don't actually use the Travis Python, but this keeps it organized. + - "3.6" +install: + - sudo apt-get update + # We do this conditionally because it saves us some downloading if the + # version is the same. + - if [[ "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then + wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh -O miniconda.sh; + else + wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh; + fi + - bash miniconda.sh -b -p $HOME/miniconda + - export PATH="$HOME/miniconda/bin:$PATH" + - hash -r + - conda config --set always_yes yes --set changeps1 no + - conda update -q conda + # Useful for debugging any issues with conda + - conda info -a + - conda config --add channels bioconda + - conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION samtools bowtie2 mash bcftools biopython nose blast pandas seqtk + - source activate test-environment + - python setup.py install + +script: + - nosetests \ No newline at end of file