# HG changeset patch
# User jpetteng
# Date 1515187279 18000
# Node ID 06e7c13554313049cc51ea3d25f5c011f479efb8
# Parent  b9146bf9de087d0c8fb376ffad9fc5c28c007bd9
Uploaded

diff -r b9146bf9de08 -r 06e7c1355431 ecoli_serotyping/ectyper.xml
--- a/ecoli_serotyping/ectyper.xml	Fri Jan 05 15:58:51 2018 -0500
+++ b/ecoli_serotyping/ectyper.xml	Fri Jan 05 16:21:19 2018 -0500
@@ -19,8 +19,9 @@
         ln -s $jobtype.fastq1 sample_1.fastq;  
         ln -s $jobtype.fastq2 sample_2.fastq;  
       #end if
+	PYTHONPATH=\$PATHONPATH:$__tool_directory__/ecytper/
 
-      $__tool_directory__/ectyper/ectyper.py
+      $__tool_directory__/bin/ectyper.py
       #if $jobtype.select == "asm"
         -m 4
         -i sample.fasta