# HG changeset patch
# User jpetteng
# Date 1515513743 18000
# Node ID 5442b9d2e5d1bfdd8cc6a01b2e07f3f40142132a
# Parent  41301e1f075a84081d01dcdf97e100c312f3dee6
Uploaded

diff -r 41301e1f075a -r 5442b9d2e5d1 ecoli_serotyping/ectyper.xml
--- a/ecoli_serotyping/ectyper.xml	Tue Jan 09 10:38:16 2018 -0500
+++ b/ecoli_serotyping/ectyper.xml	Tue Jan 09 11:02:23 2018 -0500
@@ -2,6 +2,15 @@
     <requirements>
       <requirement type="package" version="3.6.3">python</requirement>
       <requirement type="package">ectyper</requirement>
+      <requirement type="package">biopython</requirement>
+      <requirement type="package">blast</requirement>
+      <requirement type="package">samtools</requirement>
+      <requirement type="package">bcftools</requirement>
+      <requirement type="package">bowtie</requirement>
+      <requirement type="package">spades</requirement>
+      <requirement type="package">seqtk</requirement>
+      <requirement type="package">pandas</requirement>
+      <requirement type="package">mash</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
       #if $jobtype.select == "asm"